Related by context. All words. (Click for frequent words.) 75 #S rRNA 74 cis regulatory 73 orthologs 72 intronic 71 sequence homology 70 paralogs 70 intergenic 70 quantitative trait loci 70 subcellular localization 70 intergenic regions 69 homologues 69 ciliated 69 coexpression 69 polyploid 69 cytochrome b 69 H#K#me# 69 microsatellite markers 69 fig. S1 68 ortholog 68 #S rRNA gene 68 indel 68 A. thaliana 68 constitutively expressed 68 indels 68 metazoan 67 carboxyl terminal 67 fig. S2 67 archaeal 67 phylogenetic analyzes 67 S. cerevisiae 67 immunodominant 67 evolutionary conserved 67 histone H4 67 heterochromatic 67 chromosome #q# [001] 67 At#g# 67 Supplementary Fig 67 proline rich 67 mitochondrial gene 67 Alu elements 67 QTLs 67 RRM1 67 operons 67 dinucleotide 67 synthases 67 differentially expressed genes 67 figs. 67 ribosomal protein 67 missense mutations 67 conserved sequences 66 transcriptional regulation 66 splice variants 66 evolutionarily conserved 66 Fig. 2a 66 eukaryote 66 Eukaryotes 66 D. melanogaster 66 cDNAs 66 dimeric 66 homologs 66 gene duplications 66 RNA polymerases 66 Trichophyton rubrum 66 kDa protein 66 prokaryotic 66 ESR1 66 enolase 66 homology 66 CD1d 66 miRNA expression 66 Phenotypic 66 serine threonine kinase 66 ORFs 66 noncoding 65 paternally inherited 65 #S rDNA 65 ribosomal DNA 65 lymphoid cells 65 operon 65 transcriptome sequencing 65 eukaryotic 65 sensu lato 65 #p# [003] 65 transmembrane 65 metabolomic profiles 65 V#F mutation 65 heterozygotes 65 rRNA 65 cytoplasmic domain 65 mRNA transcripts 65 Saccharomyces 65 #S rRNA genes 65 C#T [002] 65 phenotypic variation 65 Caenorhabditis 65 amino terminal 65 chloroplast genome 65 cathepsin B 65 linkage disequilibrium 65 synteny 65 genetic loci 65 VNTR 65 Upregulation 65 rs# [004] 65 CpG island 65 ribosomal proteins 65 homologous 65 clonally 65 virulence genes 65 ncRNA 65 genes encoding 65 intron 65 Histone 65 ultrastructural 65 homozygosity 65 coding sequences 65 metaplasia 65 serine protease 65 vacuolar 65 COL#A# 65 coiled coil 64 cells transfected 64 homodimers 64 C#Y 64 lacZ 64 orthologous genes 64 clades 64 wildtype 64 Corynebacterium 64 PRNP 64 IgG1 64 Prevotella 64 phylogenies 64 homodimer 64 BRAF V#E 64 #q#.# [002] 64 mRNA expression 64 chromatin immunoprecipitation ChIP 64 histone modifications 64 hypermethylated 64 Phylogenetic analysis 64 substrate specificity 64 SLC#A# [001] 64 meiotic recombination 64 mitochondrial DNA mtDNA 64 pseudogenes 64 Fig. 1A 64 ploidy 64 esterase 64 mononuclear 64 functional polymorphism 64 budding yeast 64 homologies 64 PTPN# 64 polynucleotide 64 amino acid sequences 64 Western blotting 64 Arabidopsis genome 64 xenograft tumors 64 Rap1 64 postsynaptic 64 amino acid substitutions 64 posttranslational modifications 64 T. brucei 64 Amino acid 64 cDNA libraries 64 intermediate filaments 64 PDZ domain 64 pseudogene 64 ZNF# 64 Bifidobacterium longum 64 immunostaining 64 β1 64 immunoreactivity 64 microcephalin 64 P cadherin 64 sequenced genomes 64 genes differentially expressed 64 monophyletic 64 constitutively active 64 peptide receptor 64 receptor CD# 64 HepG2 cells 64 prion gene 64 previously uncharacterized 64 untranslated regions 64 S. pombe 64 mitogen activated protein kinase 63 transgene expression 63 Fig. 3b 63 single celled yeast 63 distinct lineages 63 MLH1 63 Xenopus 63 Chlamydomonas 63 S. enterica 63 #S ribosomal RNA 63 Leydig cells 63 SNP rs# [001] 63 rs# [001] 63 X chromosome inactivation 63 immunoreactive 63 F actin 63 CagA 63 immunofluorescent 63 plastid 63 tetramer 63 cytokine receptors 63 peroxidase 63 Fig. 1b 63 trophoblast cells 63 Supplementary Table 63 amino acid residues 63 phospholipase 63 bilaterians 63 methylation patterns 63 serine threonine 63 forkhead 63 monogenic 63 cytokeratin 63 ligand binding 63 immunocytochemistry 63 EGFP 63 somatic mutations 63 segmental duplications 63 FGFR2 63 transcriptomes 63 nucleotide sequence 63 KCNQ1 63 methyltransferase 63 OCT4 63 RFLP 63 epistasis 63 gambiae 63 alternatively spliced 63 MDR1 63 PcG proteins 63 frameshift mutation 63 chromatin modification 63 Immunohistochemical staining 63 coding genes 63 potent inhibition 63 MDCK cells 63 outer membrane proteins 63 rs# [002] 63 nucleotide sequences 63 antiproliferative activity 63 KLF4 63 de novo synthesis 63 NKX#.# 63 experimentally validated 63 mitochondrial genomes 63 Jhdm2a 63 tRNA synthetase 63 microRNA expression 63 fig. S4 63 lysates 63 phospho 63 lysine residues 63 proteomic analysis 63 introgression 63 myoepithelial 63 transmembrane protein 63 syngeneic 63 CRISPR 63 BMAL1 63 immunoblotting 63 isotypes 63 Genotypic 63 Polymorphisms 63 Rab5 63 neuroligins 63 murine 63 endonuclease 63 mtDNA sequence 63 outbred 63 major histocompatibility complex 63 H#K# [002] 62 cell nuclei 62 hematoxylin 62 isoforms 62 membrane proximal 62 maternally inherited 62 MLL gene 62 heterozygosity 62 ERK1 2 62 non coding RNA 62 extracellular proteins 62 phylogenetic analysis 62 carcinoembryonic antigen 62 molecular phylogenetic 62 ectopic expression 62 hydrolase 62 gametophyte 62 extracellular domains 62 ribonucleotide 62 heritable traits 62 isotype 62 uPAR 62 A. gambiae 62 chromosome #q# [002] 62 olfactory receptor 62 hepatoma 62 ERK1 62 aneuploid 62 E Cadherin 62 Fig. 2B 62 transgenic mice expressing 62 T#M 62 succinate dehydrogenase 62 Fig. 1D 62 proteolytic cleavage 62 C. jejuni 62 soluble proteins 62 isomerase 62 yeast Saccharomyces cerevisiae 62 immunohistochemical 62 mammalian genomes 62 γ secretase 62 3'UTR 62 human mammary epithelial 62 coding exons 62 transmembrane domain 62 splenocytes 62 DEAR1 62 mutant allele 62 adipogenic 62 intraspecific 62 p# p# 62 endocytic 62 punctate 62 Fig. 3a 62 transcriptional activation 62 Fig. 2C 62 ABCB1 gene 62 recombination hotspots 62 P2X 62 DGGE 62 env gene 62 urothelial 62 LNCaP cells 62 extracellular domain 62 osteoblastic 62 c KIT 62 homologous genes 62 amino acid residue 62 cytotoxicity assays 62 trinucleotide 62 ribonucleic acids 62 TMPRSS2 ERG fusion 62 UTRs 62 transferase 62 coevolution 62 3' UTR 62 sexually dimorphic 62 TIMP 1 62 tyrosine residues 62 Eg5 62 PGCs 62 glomerular 62 cytidine 62 BAC clones 62 striated muscle 62 cyclin E 62 previously undescribed 62 phosphorylates 62 Bos taurus 62 proapoptotic 62 centromeric 62 cDNA library 62 mRNA encoding 62 histone demethylase 62 SDS PAGE 62 ERK signaling 62 monomeric 62 amplicons 62 nucleolar 62 tropomyosin 62 allelic 62 Fig. 3A 62 C#BL 6 62 #q# [001] 62 phylogeographic 62 hydroxyproline 62 germline mutations 62 telomeric 62 Fig. 1C 62 Bacteroides 62 phylogenetically 62 chloroplast 62 SNP rs# [002] 62 deacetylation 62 deuterostomes 62 HLA DRB1 62 LPA gene 62 piRNAs 62 FKBP# 62 Histologic 62 polynucleotides 62 subfamilies 62 guanosine 62 Tetrahymena 62 inbred strains 62 site directed mutagenesis 62 GLUT1 62 exon intron 62 ultrastructure 62 centromeres 62 epigenetic modification 62 astrocytic 62 plastids 62 Overexpression 62 clonal expansion 62 GenBank accession 62 Xenopus laevis 62 nucleotide binding 62 rostral 62 TSC1 62 CpG islands 62 umbilical vein 62 RAS RAF MEK 62 phenotypically 62 Th1 Th2 62 Dysregulation 61 RNA binding 61 chemotactic 61 β galactosidase 61 chromatin structure 61 mRNA molecules 61 beta tubulin 61 EphB4 61 HER2 HER2 61 Prochlorococcus 61 mammalian fatty acid 61 proteolysis 61 Fig. 2b 61 T rubrum 61 RNA sequences 61 clinicopathological 61 Fig. 1d 61 disulfide bond 61 proline 61 SNCA 61 epithelia 61 PAX5 61 exonuclease 61 ligand receptor 61 trophoblast 61 antigenic epitopes 61 polypeptide chain 61 CD# CD# 61 polyploidy 61 perivascular 61 vertebrate genomes 61 drug metabolizing enzymes 61 radial glia 61 genetic polymorphism 61 chordate 61 chromatin immunoprecipitation 61 pleiotropic 61 hydroxylase 61 metazoans 61 nucleotide substitution 61 globular proteins 61 glycosylated 61 DNMT1 61 #p#.# [001] 61 Volvox 61 subventricular zone 61 genome rearrangements 61 hypervariable 61 nucleolin 61 Skeletal muscle 61 proteins encoded 61 KIAA# 61 ENPP1 61 microglial 61 stem cell pluripotency 61 TMEM#B 61 PCR amplified 61 differential gene expression 61 seminal vesicle 61 lymphocytic 61 oligomeric 61 transcriptionally 61 homologous sequences 61 condensin 61 vimentin 61 eukaryotic genomes 61 CD#c 61 replicon 61 Chromosomal 61 miR #a [001] 61 inhibin B 61 colocalization 61 colon carcinoma 61 ncRNAs 61 neurite outgrowth 61 transcriptomic 61 N acetyltransferase 61 antibody antigen 61 differentially expressed 61 secretory pathway 61 kinase domain 61 odorant receptor 61 Schematic representation 61 morphogen 61 transiently transfected 61 erythrocytes 61 HOTAIR 61 NF1 gene 61 Macrophage 61 SVZ 61 SSc 61 primate genomes 61 M1 muscarinic 61 autophagic 61 DNA demethylation 61 EF Tu 61 Phylogenetic analyzes 61 retinoid X 61 Phosphorylation 61 CpG 61 AMACR 61 PON1 gene 61 nitrogenase 61 C#BL/#J 61 mutant alleles 61 receptor tyrosine kinase 61 retrotransposon 61 JAK STAT 61 noncoding RNAs 61 haplotypes 61 ribosomal RNA rRNA 61 Morphological 61 #q# [002] 61 amino acid sequence 61 Streptococcus agalactiae 61 reproductively isolated 61 mesoderm 61 osteoblast 61 potent inhibitors 61 matrix metalloproteinase 61 guanine G 61 subcellular 61 matrix metalloproteinases 61 axon guidance 61 hypomethylation 61 moieties 61 papillary renal cell carcinoma 61 phenotypic traits 61 constitutively 61 autosomal 61 tRNA genes 61 biogenesis 61 diploid 61 BMP2 61 uniparental 61 aggrecan 61 globin genes 61 fibroblast 61 inhibitory receptor 61 Fig. 1B 61 metalloproteinase 61 chromosome #q#.# [002] 61 proto oncogene 61 Oncogenic 61 ectodermal 61 collagenous 61 Cyclin E 61 pyrimidine 61 NS5B 61 eukaryotic cell 61 heterodimers 61 inactivating mutations 61 Phylogenetic 61 1alpha 61 morphologically 61 segmental duplication 61 clade B 61 occludin 61 carboxy terminal 61 antiparallel 61 C. albicans 61 steroidogenic 61 fission yeast 61 missense mutation 61 proteomes 60 Fig. 1a 60 Transcriptome 60 #p#.# [002] 60 Fig. 2A 60 Bacillus thuringiensis bacterium 60 somatostatin 60 acetyltransferase 60 rRNA genes 60 ssDNA 60 Haplotype 60 prion strains 60 gag pol 60 Nup# 60 ERBB2 60 felis 60 transmembrane domains 60 Mutational 60 immunohistochemical analysis 60 tetramers 60 FGF signaling 60 gene locus 60 differentially regulated 60 cell adhesion molecule 60 homologue 60 demethylase 60 FUS1 60 protein tyrosine phosphatase 60 DNA methylation patterns 60 morphogenesis 60 genomic loci 60 MMP# 60 chromosome #q 60 aspartyl 60 phosphoprotein 60 subfamily 60 MAPK pathway 60 HER2 HER3 60 autoreactive 60 CD3 + 60 HLA DRB1 * 60 miR# 60 GSTP1 60 Ser# 60 miRNAs miR 60 neural progenitor 60 subcellular compartments 60 CHD7 60 genetic lineages 60 Fig. 3B 60 epidermal cells 60 APOL1 60 dioxygenase 60 FGFR3 60 TOP2A gene 60 Figure 1C 60 adduct 60 ribonuclease 60 receptor kinase 60 osteogenic 60 hematopoietic progenitors 60 striatal 60 histone H3 60 rDNA 60 ciliates 60 transfected 60 missense 60 Fc receptor 60 DLC1 60 VSV G 60 histocompatibility 60 valine 60 overexpressing cells 60 cytosolic 60 germline cells 60 CD# + [001] 60 Fig. 3c 60 Saccharomyces cerevisiae 60 K ras mutations 60 spinous 60 glutathione S transferase 60 mycobacterial 60 telomerase reverse transcriptase 60 V3 loop 60 hexose 60 Salmonella enterica 60 spectrin 60 chordates 60 upregulated 60 contigs 60 proximal tubule 60 evolutionarily distant 60 Fig. 1E 60 amino acid alanine 60 bronchoalveolar 60 TTR gene 60 pathophysiological effects 60 PDZ domains 60 intercellular signaling 60 Prox1 60 promoter methylation 60 CD#b 60 hemagglutinin gene 60 TIMP 60 eukaryotic organisms 60 #q#.# [001] 60 chromosomal DNA 60 immunoglobulin G 60 donor acceptor 60 E. faecalis 60 c Myb 60 NFKBIA 60 chromosomal regions 60 PB1 F2 60 splice variant 60 subsp 60 overexpressing 60 immunoregulatory 60 FOXO3a 60 chromosomal rearrangements 60 ABCB1 60 mutational analysis 60 homeobox gene 60 prokaryote 60 downregulated 60 antiapoptotic 60 miRNA genes 60 transcriptional repressor 60 sRNA 60 C. neoformans 60 parthenogenetic 60 ontogeny 60 BARD1 60 cybrid 60 microdeletion 60 P. gingivalis 60 monocytic 60 Secretase 60 cytochrome 60 bacterium Escherichia coli 60 DNA methyltransferase 60 variant alleles 60 supernatants 60 TET2 60 Rickettsia 60 protein phosphorylation 60 catenin 60 Clusterin 60 epithelial cell 60 gene polymorphisms 60 HAR1 60 glycosyltransferase 60 PrPSc 60 cysteines 60 Genotypes 60 trabecular 60 phenotypic characteristics 60 ligand induced 60 distinct subtypes 60 CDKN2A 60 cAMP signaling 60 K#R [002] 60 BrdU 60 interconversion 60 lymphoblastoid cell lines 60 mediated inhibition 60 ectodomain 60 fig. S# 60 Platynereis 60 tumorigenicity 60 fruitfly Drosophila 60 COOH terminal 60 tyrosine phosphorylation 60 splice junctions 60 cellular organelles 60 anterior pituitary 60 HER2 neu 60 Immunohistochemical analysis 60 CD# expression [001] 60 presynaptic 60 CaM 60 D. simulans 60 haplogroups 60 gene expression microarrays 60 histologic subtypes 60 chromosomal deletions 60 Gene Ontology 60 immunofluorescence staining 60 Cytochrome 60 nucleotide substitutions 60 mesenchyme 60 morphologic 60 cysteine residues 60 ErbB1 60 Vps# 60 transduced 60 polyadenylation 60 p# MAPK 60 PIP2 60 affinity purified 60 ankyrin repeat 60 GFP fluorescence 60 denaturing gradient gel electrophoresis 60 unmethylated 60 Or#b 60 oligonucleotide microarrays 60 isogenic 60 frontotemporal 60 chromosome #p#.# 60 intramolecular 60 CRISPR Cas 60 haemagglutinin 60 cellularity 60 plant Arabidopsis thaliana 60 MSH2 60 Dopaminergic 60 microsatellite loci 60 glycolipid 60 melanocyte 60 APOA5 60 PBMCs 60 telomere DNA 60 amino terminus 60 polyamine 60 GTPase 60 mammalian tissues 60 synuclein 60 NOD SCID mice 60 multigenic 60 heterozygous 60 histone modification 60 proteinases 60 lateral ventricle 60 thyroid carcinomas 60 hydrated electron 60 SOCS3 60 hepatic lipase 60 immunofluorescence microscopy 59 A. niger 59 dimorphic 59 Trypanosoma brucei 59 DRD2 59 extramedullary 59 MTT assay 59 amphioxus 59 CYP#B# 59 cationic lipid 59 cytosine methylation 59 allele frequencies 59 reticular 59 GPx 59 mRNA sequences 59 chromosomal rearrangement 59 cultured neurons 59 C#BL 6 mice 59 perinuclear 59 Cathepsin B 59 RUNX3 59 synthetase 59 microRNA molecule 59 cardiac fibroblasts 59 somites 59 hypointense 59 Stromal 59 circadian genes 59 pleomorphic 59 immunofluorescence 59 viral capsid 59 intracellular signaling 59 M. pneumoniae 59 distantly related species 59 villous 59 LRP5 59 Cx# [001] 59 STAT4 59 ChIP chip 59 gene encodes 59 downstream effector 59 evolvability 59 mononuclear cells 59 focal adhesions 59 protein conformation 59 Microtubule 59 stably transfected 59 microRNAs miRNAs 59 R#W [002] 59 cisplatin resistant 59 hypothalamic pituitary 59 heterologous expression 59 tiny roundworm 59 ChIP seq 59 chromosome #q#.# [001] 59 Staphylococcus epidermidis 59 acinar 59 heterologous 59 Anopheles gambiae 59 gDNA 59 macromolecular complexes 59 RecA 59 Cre recombinase 59 silico prediction 59 Conserved 59 clinicopathologic 59 pDC 59 morphologically distinct 59 HLA DQ2 59 ubiquitinated 59 Hox genes 59 LIS1 59 DQB1 * 59 eIF4E 59 cagA 59 chimpanzee genomes 59 hypermethylation 59 Eukaryotic 59 nucleosome positioning 59 heparanase 59 methylated DNA 59 trimeric 59 striata 59 teleost 59 1beta 59 metapopulation 59 beta actin 59 HEK# cells 59 c MYC 59 proteolytic 59 threonine 59 luciferase reporter 59 breast carcinomas 59 PCR RFLP 59 epitope 59 alpha subunit 59 transcriptome 59 lysate 59 oligomer 59 Alleles 59 trimers 59 osteoclast 59 c fos 59 transcriptome profiling 59 RAR beta 59 SIRT2 59 uracil 59 receptor ligand 59 TRPV4 59 Tribolium 59 fig. S6 59 VEGFR1 59 proximal tubular 59 miRs 59 δ 59 Cytotoxic T 59 matrix metalloproteinase MMP 59 Fas ligand 59 fungal genomes 59 superfamily 59 picomolar 59 p#Kip# 59 bacterial genomes 59 FoxP3 59 autosomes 59 morphological similarities 59 MECP2 gene 59 phosphorylated tau 59 CCR7 59 SLITRK1 59 CD8 + 59 upregulates 59 oligomerization 59 heterodimer 59 ß1 59 haematopoietic 59 QTL mapping 59 Drosophila genome 59 fluorescently tagged 59 Enterobacter 59 SETDB1 59 basolateral 59 Polymorphism 59 mammalian organisms 59 allelic variants 59 ectoderm 59 cadherin 59 GlcNAc 59 antiferromagnetic 59 phenotype 59 mitotic spindles 59 protein isoforms 59 cell adhesion molecules 59 neural stem 59 null mice 59 isoleucine 59 short hairpin RNAs 59 hemagglutinin H 59 dermatophytes 59 interleukin IL -# 59 prodynorphin 59 inducible 59 protein encoded 59 Apc 59 filoviruses 59 Enterococcus faecalis 59 Deinococcus 59 granulocyte 59 ontogenetic 59 kD 59 Propionibacterium 59 Woese 59 qRT PCR 59 mucinous 59 glycolytic