Related by context. Frequent words. (Click for all words.) 76 phylogenetic tree 67 phylogeny 66 phylogenetic 65 amino acid sequences 63 clades 61 phylogenetic analysis 60 genomic sequence 60 taxa 59 histone modifications 58 morphologically 58 lineages 58 gene sequences 57 taxon 57 eukaryotic 57 computational methods 57 genome sequences 57 haplotypes 57 mutational 57 transcriptome 57 unicellular 57 genetic sequences 56 angiosperms 56 mitochondrial genome 56 RNA viruses 56 gene expression profiles 56 prokaryotes 56 coding sequences 56 DNA sequences 56 transposable elements 55 ribozyme 55 morphologies 55 morphological 55 biological molecules 55 genomes 55 comparative genomics 55 typologies 54 eukaryotic cells 54 T. gondii 54 genotypic 54 ribonucleic acid RNA 54 subfamily 54 introns 54 convergent evolution 54 placental mammals 54 homologs 54 Arabidopsis thaliana 54 crystallographic 54 clonal 54 DNA strands 54 dendritic 54 phenotypes 53 chromosomal regions 53 ant colonies 53 viral genome 53 mtDNA 53 diploid 53 homology 53 multicellular organisms 53 conformations 53 Anopheles gambiae 53 imprinted genes 53 genetically identical 53 heterochromatin 53 mutant strains 52 topological 52 oscillatory 52 netlists 52 faunal 52 amino acid sequence 52 homologous 52 exons 52 P. falciparum 52 gene expression patterns 52 C. albicans 52 epitopes 51 phyla 51 subcellular 51 phenotypic 51 molecular markers 51 ESTs 51 Supplementary Fig 51 hypotheses 51 multicellular 51 parameterized 51 microRNA expression 51 biogeography 51 Plasmodium 51 clade 51 systematics 51 glycan 51 isotope ratios 51 microenvironments 51 metabolomic 51 thymine 51 synthetic peptides 51 VLPs 51 transposon 51 taxonomic 51 evolutionary origins 51 fluorescent molecules 51 Drosophila melanogaster