Related by context. All words. (Click for frequent words.) 72 #S rRNA gene 71 #S rRNA 70 virulence genes 69 mRNA transcripts 68 RFLP 67 S. cerevisiae 67 Corynebacterium 67 Trichophyton rubrum 67 VNTR 67 L. pneumophila 67 S. enterica 67 P falciparum 67 S. Typhimurium 67 clonally 66 Typhi 66 epistasis 66 ribosomal DNA 66 orthologs 66 C. jejuni 66 serovar 66 nucleotide substitutions 66 tiny roundworm 65 viral nucleic acids 65 Salmonella enterica 65 missense mutations 65 sequence homology 65 immunodominant 65 clade B 65 haemagglutinin 65 indel 65 C#T [002] 65 orthologous 65 cDNA synthesis 65 ESBLs 65 hemagglutinin gene 65 cDNA libraries 65 intergenic regions 65 Phenotypic 65 single celled yeast 65 RT qPCR 65 splice variants 65 epidermidis 65 miRNA expression 65 olfactory receptor 65 transgene expression 65 ortholog 65 murine leukemia virus 65 Western blotting 65 differential gene expression 65 K. pneumoniae 64 #S rDNA 64 agarose gel electrophoresis 64 #S ribosomal RNA 64 Rickettsia 64 Genotypic 64 methylation patterns 64 thermophilum 64 indels 64 B. cereus 64 operons 64 Transcriptome 64 ORFs 64 mycobacterial 64 heterochromatic 64 Candida species 64 cytidine 64 homozygosity 64 recombinants 64 intergenic 64 intronic 64 RNA polymerases 64 mRNA molecules 64 germline cells 64 metazoan 64 immunofluorescence staining 64 cytochrome b 64 ESBL producing 64 rRNA 64 Protein Interactions 64 T. brucei 64 PFGE 64 mutant allele 63 Leptospira 63 somatic mutations 63 proline rich 63 PCR amplified 63 Propionibacterium 63 Prevotella 63 Epstein Barr Virus EBV 63 GenBank accession 63 V3 loop 63 Enterococcus faecalis vancomycin susceptible 63 CagA 63 TMPRSS2 ERG 63 transcriptome analysis 63 Rap1 63 subcellular localization 63 nucleotide sequence 63 ant genomes 63 Supplementary Table 63 eukaryote 63 transmembrane protein 63 C. neoformans 63 herpesviruses 63 paramyxoviruses 63 F. tularensis 63 genetic loci 63 operon 63 Phylogenetic analysis 63 cis regulatory 63 dual tropic 63 polynucleotides 63 Plasmodium vivax 63 Bifidobacterium longum 63 quantitative trait loci 63 ribosomal proteins 63 V#F mutation 63 C. albicans 63 prion strains 63 genes encode 63 transcriptional profiling 63 Alu elements 63 N. gonorrhoeae 63 M#V 63 AFLP 63 polynucleotide 63 chromatin immunoprecipitation ChIP 62 qRT PCR 62 coagulase negative staphylococci 62 Highly Pathogenic 62 surface proteins hemagglutinin 62 Streptococcus agalactiae 62 odorant receptor 62 replicon 62 alphavirus 62 K#N 62 protein neuraminidase 62 histone modifications 62 Enterococcus faecium 62 untranslated regions 62 CHIKV 62 protein tyrosine phosphatase 62 H#K#me# 62 mutant alleles 62 PCR assay 62 neutralizing antibody responses 62 functional polymorphism 62 viral isolates 62 CD#c 62 stranded nucleic acids 62 CD# CD# 62 Mycobacterium bovis 62 V. cholerae 62 RNA ribonucleic acid 62 Genotypes 62 lysates 62 cDNAs 62 T rubrum 62 gambiae 62 lactis 62 dermatophytes 62 oncogenic transformation 62 denaturing gradient gel electrophoresis 62 coding genes 62 Drosophila genome 62 subcellular compartments 62 ribosomal protein 62 Mycoplasma pneumoniae 62 Virulence 62 IgG antibody 62 RNA sequences 62 reassortant 62 DNA demethylation 62 Neisseria gonorrhoeae 62 Cathepsin B 62 SOCS3 62 clades 62 DGGE 62 quinolone resistant 62 body louse genome 62 coding exons 62 methicillin susceptible Staphylococcus aureus 62 clade C 62 succinate dehydrogenase 62 cDNA library 62 NS5B 62 nucleotide sequences 62 genes CYP#C# 62 ChIP seq 62 RRM1 62 Single Nucleotide Polymorphisms SNPs 62 fig. S1 62 coexpression 62 RQ PCR 62 absorption spectra 62 metagenomes 62 A. thaliana 62 virus subtype 62 Bacteroides 62 B. subtilis 62 genotypic 62 paternally inherited 62 methyltransferase 62 genomic loci 62 amino acid residues 62 isotypes 62 serologically 62 LRP5 62 detecting biochemical 62 C. burnetii 62 monogenic 62 dinucleotide 62 fruitfly Drosophila 62 Lymphocyte 62 cytopathic 62 ciliated 62 phenotypically 62 obligate intracellular 62 transcriptome sequencing 62 Germline 62 yeast Saccharomyces cerevisiae 62 highly pathogenic viruses 62 EphB4 62 bacterial genomes 62 proviral DNA 62 synthetases 62 ribosomal RNA rRNA 62 differentially expressed genes 62 mitochondrial genomes 62 brucei 62 QRT PCR 61 HBV genotype 61 constitutively active 61 reassortant viruses 61 Mutational 61 archaeal 61 quantitative reverse transcriptase 61 Secretase 61 trypanosome 61 Chlamydophila pneumoniae 61 histone modification 61 BMAL1 61 innate immune responses 61 IgG4 61 major histocompatibility complex 61 antibiotic susceptibility 61 exonuclease 61 viral tropism 61 protein tyrosine phosphatases 61 HLA DQ2 61 microsatellite markers 61 heterozygotes 61 Viral RNA 61 bacterial virulence 61 replicase 61 mitochondrial gene 61 gDNA 61 M. leprae 61 IgG1 61 HepG2 cells 61 fluorogenic 61 genus Plasmodium 61 EGFP 61 ligand receptor 61 Histone 61 reaction PCR 61 fig. S2 61 T#M 61 serine threonine kinase 61 covalently bound 61 transcriptional repressor 61 ncRNA 61 eukaryotic genomes 61 At#g# 61 siRNA knockdown 61 somatic mutation 61 carboxyl terminal 61 rifamycins 61 Trypanosoma brucei 61 polarization multiplexed 61 hepatoma 61 Polymorphism 61 RT PCR assay 61 quasispecies 61 uPAR 61 P. ovale 61 Clusterin 61 Cytotoxic T 61 Xenopus laevis 61 constitutively expressed 61 Mycobacterium smegmatis 61 Fas ligand 61 umbilical vein 61 Prochlorococcus 61 neuraminidase NA 61 COL#A# 61 uniparental 61 Transfection 61 sequenced genomes 61 DNA Methylation 61 linkage disequilibrium 61 evolutionary conserved 61 nucleosome positioning 61 homodimers 61 Borrelia 61 phospholipase 61 subtyped 61 Cytogenetic 61 linearized 61 hypervariable 61 M. pneumoniae 61 Simian Immunodeficiency Virus 61 orthologous genes 61 P. falciparum 61 CD1d 61 allele frequencies 61 phylogenetic analyzes 61 QTLs 61 karyotype 61 PON1 gene 61 enteroviral 61 microRNA expression 61 comparative genomic analysis 61 Situ Hybridization 61 mammalian genomes 61 fungal genomes 61 TRIM5 61 costimulatory 61 specific CD8 + 61 Treponema pallidum 61 cagA 61 enolase 61 P2X 61 allelic 61 chimpanzee genomes 61 viral genomes 61 OCT4 61 p# MAPK 61 A#V 61 endogenous retrovirus 61 gene rearrangements 61 Enterobacteriaceae 61 breast cancer subtypes 61 cell lysates 61 missense 61 M. ulcerans 61 Dehalococcoides 61 Haplotype 60 supernatants 60 CCR5 delta# 60 phosphorylates 60 subtilis 60 Aspergillus nidulans 60 B. fragilis 60 etiologic agent 60 Escherichia coli Klebsiella pneumoniae 60 Staphylococcus epidermidis 60 lymphoblastoid cell lines 60 deacetylation 60 chromatin immunoprecipitation 60 Sanger sequencing 60 H#N# isolates 60 PCR RFLP 60 Plasmodium species 60 Saccharomyces 60 CD# expression [001] 60 vesicular stomatitis virus 60 monophyletic 60 Sequenced 60 gametocytes 60 dengue viruses 60 Fig. 4a 60 C#Y 60 VSV G 60 mosaicism 60 Plasmid DNA 60 HCV replicon 60 Genetic Variation 60 ploidy 60 HLA DQ 60 quantitative PCR 60 MDR1 60 spore forming 60 Immunohistochemical staining 60 MMP# 60 avian H#N# influenza 60 ChIP Seq 60 CCL#L# 60 protein conformation 60 Vibrio cholerae 60 mitogen activated protein kinases 60 promoter methylation 60 A. gambiae 60 paralogs 60 Mutation Detection 60 M. capricolum 60 membrane proximal 60 lacZ 60 viral antigen 60 Enterobacter cloacae 60 unicellular organisms 60 Ehrlichia 60 fluorescence intensity 60 rs# [004] 60 variant allele 60 telomere DNA 60 ribonucleic acids 60 Upregulation 60 Eukaryotic 60 iTRAQ 60 lysine residues 60 Replikin 60 Epstein Barr virus EBV 60 CD3 + 60 methyltransferases 60 Leukemias 60 Alleles 60 Histologic 60 pylori 60 aT cell 60 transgenic mice expressing 60 immunostaining 60 PTPN# 60 epigenetic modification 60 HEK# cells 60 ChIP chip 60 prokaryote 60 totipotent 60 transcriptomes 60 amplicons 60 AMACR 60 sea urchin genome 60 pleiotropic 60 Anopheles gambiae mosquitoes 60 PCR primers 60 Interferon gamma 60 Nucleotide 60 Coxiella burnetii 60 GPI anchored 60 Amino acid 60 proteolysis 60 recombination hotspots 60 guanosine 60 evolutionarily conserved 60 p tau 60 globin genes 60 cDNA clone 60 esterase 60 CCR7 60 miRNA molecules 60 Pseudomonas syringae 60 valine 60 antigenic shift 60 phenotypic variation 60 evolvability 60 phenotypic expression 60 cytotoxicity assays 60 P. gingivalis 60 Sindbis virus 60 protein encoded 60 DNA methylation patterns 60 tRNA synthetase 60 μ opioid receptor 60 proto oncogene 60 BRAF protein 60 T#I [002] 60 Salmonella spp 60 Typhimurium 60 noncoding 60 Human Leukocyte Antigen 60 mRNA encoding 60 thioredoxin 60 T. vaginalis 60 homodimer 60 PCR amplification 60 inhibitory receptor 60 posttranslational modifications 60 frameshift mutation 60 gene amplification 60 Chlamydia trachomatis 60 dimeric 60 heterodimer 60 Phylogenetic 60 oligonucleotide microarrays 60 pea aphid 60 homozygote 60 differentially expressed proteins 60 Escherichia 60 MAPK pathway 60 antigenically 60 cellulases 60 GFP fluorescence 60 Salmonella typhi 60 introgression 60 chromatogram 60 PBMCs 60 B. burgdorferi 60 Nocardia 60 TNFR1 60 Immunohistochemical 60 synthetase 60 H. influenzae 60 homologous sequences 60 alternatively spliced 60 miRNAs miR 60 K ras mutations 60 ERK1 2 60 CRISPR Cas 60 IRE1 60 FKBP# 60 miRNA genes 60 immunohistochemical analysis 60 proteomic analysis 60 P. falciparum parasites 60 Polymerase 60 tyrosine phosphorylation 60 immunofluorescence microscopy 60 methylenetetrahydrofolate reductase 60 nasopharyngeal swabs 60 Polymorphisms 60 site directed mutagenesis 60 5 hydroxymethylcytosine 60 GABAB receptors 60 JAK2 enzyme 60 cynomolgus macaques 60 pathogenic mutations 60 tropomyosin 60 chloroplast genome 60 amino acid substitution 60 assay detects 60 methicillin resistant MRSA 60 C. perfringens 60 Vps# 59 post translational modifications 59 splice junctions 59 enterotypes 59 SARS CoV 59 vaginalis 59 CYP #D# 59 ssDNA 59 heterodimers 59 Anopheles gambiae 59 Neisseria 59 dsRNA 59 heterologous expression 59 gag pol 59 phylogenetic analysis 59 Enterococcus faecalis 59 adenylyl cyclase 59 probiotic Lactobacillus 59 perilipin 59 isoenzyme 59 avium 59 mutant strains 59 nematode worm 59 multigenic 59 Subtype 59 staphylococci 59 nucleolar 59 cytoplasmic domain 59 synuclein 59 MALDI TOF MS 59 Leydig cell 59 Aspergillus oryzae 59 messenger ribonucleic acid 59 receptor kinase 59 Decoding genome 59 neurite outgrowth 59 Supplemental Figure 59 #q# deletion 59 miRNA expression profiles 59 envelope glycoprotein 59 allelic variants 59 lysate 59 pathogenic bacterium 59 inbred strains 59 rotavirus strains 59 gp# [002] 59 peroxidase 59 Cry1Ac 59 oseltamivir resistant 59 Rab5 59 macromolecule 59 pDC 59 Fourier transform infrared 59 MC1R gene 59 Trypanosoma 59 neutralizing antibody 59 segmental duplications 59 immunoblotting 59 RNAi mediated 59 p# alpha [002] 59 adenylate cyclase 59 synteny 59 hypermethylated 59 flavivirus 59 gp# protein [002] 59 Nedd4 59 immunized mice 59 avian H#N# 59 tetramers 59 immunofluorescent 59 #ß 59 polyploid 59 immunofluorescence 59 vanA gene 59 cellular prion protein 59 metalloprotease 59 Dysregulation 59 circadian genes 59 MEFs 59 microsporidia 59 methicillin susceptible MSSA 59 H5 strains 59 TIMP 1 59 HLA DRB1 59 CYP#C# [002] 59 oxacillin 59 substrate specificity 59 mycobacteria 59 M. anisopliae 59 avidin 59 cytosine methylation 59 KLF4 59 opportunistic pathogen 59 peptide receptor 59 strand RNA 59 Cytoplasmic 59 ZNF# 59 HLA proteins 59 HPAI H#N# 59 microRNAs miRNAs 59 causal variants 59 δ 59 peroxisome 59 eukaryotic cell 59 HIF 1alpha 59 proviral 59 subcellular structures 59 Antigens 59 Enterobacter 59 SSc 59 Deinococcus 59 glycolipids 59 thrombospondin 59 Staphylococci 59 H#N# influenza viruses 59 Phenotypes 59 HMPV 59 #.# MHz [002] 59 RNA viruses 59 nonpathogenic 59 sRNAs 59 endonuclease 59 peptide antigens 59 Plasmodium 59 Salmonella serotypes 59 CHO K1 59 outer membrane proteins 59 primordial germ cells 59 Karayiorgou 59 chromosomal aberrations 59 Candida glabrata 59 homologues 59 transiently transfected 59 glabrata 59 reaction RT PCR 59 proton MR spectroscopy 59 nucleated cells 59 linkage disequilibrium LD 59 noncoding RNA 59 genomic alterations 59 spectroscopic technique 59 Activating mutations 59 APOBEC3G 59 ABCB1 59 spirochete 59 HLA genes 59 distinct lineages 59 urease 59 mediated inhibition 59 replikin 59 Sulfolobus 59 VKORC1 59 figs. 59 NF kappaB activation 59 ectopic expression 59 C. difficile toxins 59 metabolomic profiles 59 androgen receptor AR 59 DR4 59 thymidine kinase 59 K#R [002] 59 RNA Seq 59 NRTI resistance 59 D. melanogaster 59 Mycobacterium 59 Nosema apis 59 6S RNA 59 soluble proteins 59 Extracellular 59 maternally inherited 59 de novo mutations 59 Caenorhabditis 59 SOD2 59 p# antigen 59 BALB c 59 Transcription factors 59 reverse transcriptase RT 59 unmethylated 59 hemagglutinin H 59 MTT assay 59 TP# gene 59 suppressor gene 59 Y. pestis 59 thymidylate synthase TS 59 translationally 59 RNA transcripts 59 DNA Polymerase 59 Plasmodium falciparum 59 conserved sequences 59 kilobase 59 R#W [002] 59 S Typhi 59 Haemophilus 59 dengue serotype 59 gamma globin 59 inorganic nanostructures 59 Babesia 59 FLT3 kinase 59 immitis 59 CpG island 59 endosymbiont 59 CAG repeats 59 glycopeptide 59 fission yeast 59 CPEB 59 TUNEL 59 evolutionary relatedness 59 highly pathogenic strains 59 Wolbachia 59 avian influenza viruses 59 autosomes 59 trimers 59 rotaviruses 59 thyrotropin 59 RNase L 59 Supplementary Fig 59 Fig. 3a 59 IFN γ 59 amino acid substitutions 59 TSC1 59 TCF#L# gene 59 NKX#.# 59 autosomal 59 AdV 59 nucleases 59 IFN ß 59 Thorough cooking kills 59 Streptococcus pyogenes 59 κ 59 Yersinia enterocolitica 59 Trichinella 59 tRNA synthetases 59 parainfluenza virus 59 demodulated 59 allelic variation 59 phylogenetically 59 M1 muscarinic 59 causative mutations 59 TRAIL induced apoptosis 59 HLA alleles 59 vitellogenin 59 Bacillus thuringiensis bacterium 59 hydroxyproline 59 aneuploid 59 proteosome 59 FLT3 58 Leydig cells 58 Nucleic Acids Res 58 Morphological 58 Fig. 3b 58 genotoxic stress 58 glycosylation profile 58 Entamoeba 58 kinase domain 58 putative biomarkers 58 spectrum beta lactamases 58 astrocytic 58 microdeletions 58 amphioxus 58 N acetyltransferase 58 Huntingtin 58 Staphylococcus bacteria 58 nAChRs 58 primate genomes 58 dsDNA 58 immunoglobulin genes 58 2' O methyl 58 Figure 1A 58 DEAR1 58 cells transfected 58 Ribosomal 58 aggrecan 58 breast carcinomas 58 VEGFR1 58 humoral responses 58 S. sanguinis 58 sexually dimorphic 58 Hsp# [001] 58 Hemagglutinin 58 occludin 58 E. faecalis 58 diploid 58 P aeruginosa 58 condensin 58 Serotype 58 genome rearrangements 58 X Chromosome 58 sensu lato 58 IgA deficiency 58 fig. S6 58 granzyme 58 CYP#D# gene 58 hematopoietic progenitors 58 short hairpin RNA 58 Single Nucleotide Polymorphism 58 FUS1 58 GSTP1 58 molecular scissors 58 enzyme immunoassay EIA 58 intracellularly 58 Hematopoietic 58 Or#b 58 Candida albicans 58 C#BL/#J 58 tumorigenicity 58 mutant proteins 58 methylated DNA 58 Estrogen Receptor 58 abnormal amyloid 58 experimentally validated 58 phenotypic traits 58 Treponema 58 gene expression microarrays 58 B. henselae 58 Plasmodium parasites 58 Alternative splicing 58 Rho GTPases 58 cysteine residues 58 hypervirulent 58 GPx 58 spinous 58 picornavirus 58 UGT#A# 58 kD 58 leiomyoma 58 etiologic 58 Signal transduction 58 RNA fragments 58 stem cell pluripotency 58 viral proteins 58 PI3K gene 58 cytochrome P#s 58 D#N 58 missense mutation 58 PGCs 58 microbiomes 58 HER2 HER3 58 IL #E 58 Caenorhabditis elegans 58 molecular systematics 58 #q#.# [002] 58 serum antibodies 58 colocalization 58 X. tropicalis 58 homologous genes 58 human leukocyte antigens 58 neuromelanin 58 HLA molecules 58 fluorescently tagged 58 HLA DR 58 corona virus 58 A. fumigatus 58 lymphoid cells 58 synovial cells 58 transcriptional profiles 58 rDNA 58 Epitopes 58 vacuolar 58 noncoding RNAs 58 oligomeric 58 FGFs 58 Klebsiella pneumoniae 58 differentially regulated 58 codon usage 58 Histopathologic 58 DHPLC 58 hnRNP 58 Chlamydomonas 58 CYP#A# CYP#D# 58 serine threonine 58 phenotypic differences 58 haplotypes 58 JAK STAT 58 N glycan 58 inhibin B 58 telomerase RNA 58 MAP kinase 58 M. bovis 58 Umbilical cord stem cells 58 effector proteins 58 N Myc 58 E#F# 58 Panton Valentine Leukocidin PVL 58 enzymatic pathways 58 oseltamivir resistance 58 Myeloperoxidase 58 transgenic rats 58 granzyme B 58 FMDV 58 HLA B# 58 P. acnes 58 glycolipid 58 EBNA1 58 yeast genome 58 gastric adenocarcinoma 58 cell adhesion molecule 58 IFN g 58 cultured neurons 58 Dpp 58 immunoreactivity 58 biotypes 58 glycoproteins 58 S. typhimurium 58 Francisella tularensis 58 virulence determinants 58 transfected cells 58 μM 58 KIF6 gene 58 miR #a [001] 58 SAXS 58 5 HT2A serotonin 58 previously undescribed 58 Cell Adhesion 58 bacterium Escherichia coli 58 Mycoplasma genitalium 58 glutamic acid decarboxylase 58 broadly neutralizing 58 Antigenic 58 haematopoietic 58 immunoprecipitation 58 cysteines 58 RUNX3 58 superinfection 58 prodynorphin 58 CD8 + 58 chromosome rearrangements 58 bisulfite sequencing 58 ABL1 58 Salmonella Shigella 58 peripheral blood mononuclear 58 cytotoxin 58 monocyte chemotactic protein 58 QTL mapping 58 Confocal microscopy 58 funestus 58 exomes 58 pathogenic E. coli 58 BRAF V#E 58 immunohistochemical 58 H#Y 58 Chlamydia pneumoniae 58 RefSeq 58 microRNA molecules 58 Bacteroides fragilis 58 microarray gene expression 58 S. pombe 58 CD4 + CD# 58 genetic lineages 58 nano fluidic 58 phylogenies 58 DNA methyltransferase 58 multicellular organism 58 MDCK cells 58 hamartomas 58 fluconazole resistant 58 gene loci 58 endogenous retroviruses 58 H#Y mutation 58 glycosyltransferase 58 RAS RAF MEK 58 Serologic 58 situ hybridisation 58 activating mutation 58 gastric carcinoma 58 ancient retrovirus 58 Trichomonas vaginalis 58 allele frequency