Related by context. All words. (Click for frequent words.) 73 cDNA libraries 72 cDNAs 70 cDNA microarray 69 HEK# cells 69 microsatellite markers 68 cDNA 68 mRNA transcripts 68 BAC clones 67 At#g# 67 clonally 67 fission yeast 67 N. benthamiana 67 #S rRNA 67 A. thaliana 67 chloroplast genome 67 quantitative trait loci 67 exonuclease 67 proteomic analysis 66 rRNA 66 lacZ 66 transfected cells 66 EGFP 66 stably transfected 66 Transcriptome 66 lysine residues 66 V3 loop 66 constitutively 65 Arabidopsis genome 65 MTT assay 65 immunofluorescence microscopy 65 lysates 65 hybridomas 65 β galactosidase 65 genomic sequence 65 differential gene expression 65 #S rDNA 65 Western blotting 65 operon 65 transcriptomes 65 subcellular localization 65 lysate 65 transcriptome sequencing 65 oligonucleotide microarrays 65 deacetylation 65 cell lysates 64 Cre recombinase 64 microsatellite loci 64 biotinylated 64 kDa protein 64 transcriptomic 64 polynucleotide 64 luciferase reporter 64 lymphoblastoid cell lines 64 contigs 64 uPAR 64 sequence tags ESTs 64 luciferase gene 64 olfactory receptor 64 PBMCs 64 metagenome 64 mitochondrial gene 64 Phylogenetic analysis 64 Cry1Ab 64 immunoblotting 64 SDS PAGE 63 transmembrane protein 63 cDNA clone 63 lentiviral 63 endonuclease 63 lymphoid cells 63 replicase 63 ribosomal DNA 63 proteomes 63 cDNA clones 63 RNA transcripts 63 ESTs 63 outer membrane proteins 63 cell lysate 63 #S rRNA gene 63 cDNA sequences 63 HepG2 cells 63 PGCs 63 fig. S6 63 virions 63 insecticidal protein 63 MDCK cells 63 orthologs 63 plastid 63 RNA sequences 63 ncRNA 63 C#BL 6 mice 63 mRNA molecules 63 annexin V 63 FUS1 63 transgene expression 63 coexpression 63 fluorescently labeled 63 nucleic acid molecules 63 ssDNA 63 carboxy terminal 63 genes differentially expressed 63 Xenopus laevis 63 isomerase 63 centromeric 63 short hairpin RNAs 63 transgene 62 nucleotide sequences 62 chromatogram 62 trophoblast cells 62 CHO cells 62 retroviral vector 62 Saccharomyces cerevisiae 62 directed mutagenesis 62 transgenic mouse model 62 glycan structures 62 Bacillus thuringiensis bacterium 62 hepatoma 62 substrate specificity 62 chromosome #q#.# [002] 62 homodimer 62 antisera 62 cytoplasmic domain 62 splice variant 62 fig. S2 62 #S rRNA genes 62 cathepsin B 62 deletion mutant 62 transcriptional activation 62 transcriptome 62 orthologous 62 mesenchymal stem cells MSCs 62 chick embryos 62 quantitative RT PCR 62 dsRNA 62 oligonucleotide microarray 62 embryoid bodies 62 extracellular domains 62 retrotransposon 62 methylated DNA 62 siRNA knockdown 62 genomic loci 62 peroxidase 62 Rab5 62 antibody antigen 62 ploidy 62 Corynebacterium 62 mycobacterial 62 supernatants 62 nucleases 62 phylogenetic analyzes 62 paralogs 62 transcriptome analysis 62 tumorigenicity 62 ciliated 61 proteolytic cleavage 61 plastids 61 protein fragment 61 provirus 61 vacuolar 61 nucleotide variations 61 PAX5 61 bronchial epithelial cells 61 Solexa sequencing 61 transgenic rats 61 mononuclear 61 histone acetylation 61 subcellular compartments 61 Fig. 1D 61 S. cerevisiae 61 luciferase 61 agarose gel electrophoresis 61 chromosomal DNA 61 microglial 61 cytochrome b 61 constitutively active 61 budding yeast 61 polyploid 61 mutagenesis 61 yeast genome 61 tetramers 61 fluorophore 61 recombinant antibodies 61 cytotoxicity assays 61 5 hmC 61 site directed mutagenesis 61 F actin 61 hTERT 61 Fig. 1a 61 replicon 61 antigenic epitopes 61 sequence homology 61 Htt 61 polyclonal 61 T. brucei 61 apical membrane 61 VSV G 61 carboxyl terminal 61 transcriptional repressor 61 cryo electron microscopy 61 fibronectin 61 RT PCR assay 61 viral capsid 61 SSR markers 61 Fas ligand 61 mammalian fatty acid 61 endophytic 61 Rap1 61 histone H3 61 hemolymph 61 alveolar epithelial cells 61 ovule 61 Adeno associated 61 intergenic regions 61 heterodimers 61 glycoproteins 61 recombinants 61 Arabidopsis genes 61 PrPSc 61 chloroplast 61 kinome 61 tumor antigen 61 haploid 61 Fig. 3a 61 SOCS3 61 perinuclear 61 folate receptor 61 dermal papilla cells 61 myoblasts 61 hyphae 61 splice variants 61 primordial germ cells 61 C. jejuni 61 bone marrow stromal cells 61 lentiviral vectors 61 fluorescent molecule 61 mononuclear cells 61 prostate epithelial cells 61 coding exons 60 immunodominant 60 transferrin receptor 60 striated muscle 60 phospholipase 60 mitochondrial genomes 60 Agrobacterium 60 short hairpin RNA 60 PC# cells 60 recombinantly 60 cultured neurons 60 fluorescently tagged 60 PFGE 60 cells transfected 60 homologies 60 flow cytometric 60 keratinocyte 60 chimerism 60 fibroblast cells 60 Supplementary Fig 60 transgenic mouse models 60 denaturing gradient gel electrophoresis 60 Fig. 2a 60 extracellular domain 60 syngeneic 60 prokaryotic 60 mtDNA sequence 60 homodimers 60 amplicons 60 RANTES 60 ortholog 60 trophoblast 60 Mesothelin 60 sequenced genomes 60 mitochondrial DNA mtDNA 60 urease 60 immunohistochemical analysis 60 phagocyte 60 enolase 60 cholera toxin 60 cellulase 60 plant Arabidopsis thaliana 60 mutant allele 60 immunofluorescence 60 kD 60 immunostaining 60 RT qPCR 60 hMSCs 60 ERK1 2 60 immunocytochemistry 60 GFP fluorescence 60 lectin 60 db db mice 60 tetramer 60 aggrecan 60 transgenic mouse 60 genome annotation 60 mesenchymal stromal cells 60 transcriptional profiling 60 H#K#me# 60 polymer scaffold 60 biochemical assays 60 S. Typhimurium 60 zebrafish embryo 60 miRNA expression 60 PCR amplified 60 X. laevis 60 siRNA duplexes 60 ChIP seq 60 Phylogenetic analyzes 60 activin 60 Sulfolobus 60 mutant proteins 60 neutralizing antibody responses 60 nonpathogenic 60 proline 60 hippocampal neurons 60 disulfide bond 60 Vaccinia virus 60 Cry1Ac 60 synteny 60 polypeptides 60 Haplotype 60 MEFs 60 H#K# [002] 60 Supplementary Table 60 phylogenetic trees 60 nucleated cells 60 diploid 60 alternatively spliced 60 ectodomain 60 Pichia pastoris 60 thymidine kinase 60 FKBP# 60 Leptospira 60 immunofluorescent 60 TGF alpha 60 affinity purified 60 indel 60 microtissues 60 monomeric 60 gag pol 60 female gametophyte 60 heterochromatic 60 proteomic analyzes 60 phenotypic variation 60 lung epithelial cells 60 Figure 1A 60 nucleolar 60 adipose cells 60 glycan 60 HLA antigens 60 oligonucleotide probes 60 gene amplification 60 p#NTR 60 DNMT1 60 Wnt protein 60 QTL mapping 60 mammalian tissues 60 reaction PCR 60 nucleotide sequence 60 Fig. 2A 59 condensin 59 X chromosome inactivation 59 polypeptide 59 RRM1 59 mucin 59 bacterial genomes 59 Immunohistochemical analysis 59 yeast Saccharomyces cerevisiae 59 syntaxin 59 Leydig cells 59 planarian 59 Enterobacter 59 β1 59 CD1d 59 mutational analysis 59 quasispecies 59 synthases 59 operons 59 virulence genes 59 cellulases 59 linkage disequilibrium LD 59 N glycans 59 plasmid DNA 59 Prevotella 59 KLF4 59 Fig. 1A 59 vascular endothelial cells 59 ribonuclease 59 cultured rat 59 missense mutations 59 photosystem 59 androgen receptor AR 59 antisense molecules 59 Experimentally 59 DNA nanoarrays 59 DEAR1 59 adenoviral vector 59 IgG1 59 Fig. 3b 59 GPx 59 enzymatic activity 59 PCR primers 59 FSH receptor 59 Xenopus 59 A. fumigatus 59 transgenic mice expressing 59 amino acid residues 59 mouse fibroblasts 59 embryonic fibroblasts 59 haplotype map 59 Caenorhabditis 59 secretory proteins 59 MT1 MMP 59 lipopolysaccharide LPS 59 linkage disequilibrium 59 Arabidopsis plants 59 RNA polymerases 59 nucleotide substitutions 59 sphingolipid 59 kinesin motor 59 green alga Chlamydomonas 59 endocytic 59 structural rearrangements 59 Aspergillus oryzae 59 adenoviral 59 IgG antibodies 59 mammalian genomes 59 reinhardtii 59 CpG 59 mRNA expression 59 hexose 59 Confocal microscopy 59 p# INK4a 59 Golgi apparatus 59 cybrid 59 bisulfite sequencing 59 splice junctions 59 transcriptionally active 59 colorectal tumor 59 ribosomal proteins 59 Microarray analysis 59 ribonucleic acid RNA 59 P. gingivalis 59 homozygosity 59 extracellular matrix proteins 59 aminopeptidase 59 #S subunit 59 Fig. 1c 59 peripheral blood mononuclear 59 carcinoembryonic antigen 59 interactome 59 nuclease 59 Trichoderma 59 Drosophila genome 59 transfected 59 amplicon 59 immunoreactive 59 TGF ß 59 globin genes 59 fig. S1 59 ERalpha 59 chimeric 59 BrdU 59 intergenic 59 hybridoma cells 59 eukaryotic cell 59 TIMP 59 fucose 59 ribonucleotide 59 neurite outgrowth 59 Agrobacterium tumefaciens 59 fungal genomes 59 fluorescence intensity 59 methylation patterns 59 zebrafish embryos 59 MALDI TOF MS 59 sequenced genome 59 overexpressing 59 serum antibodies 59 HCV replicon 59 oligosaccharide 59 telomeric 59 CD#c 59 tumor biopsies 59 intraperitoneal injection 59 cellular prion protein 59 amino acid substitutions 59 vesicle fusion 59 beta actin 59 lipid bilayers 59 proteinase 59 normal prion protein 59 MMP9 59 S. enterica 59 ovarian follicles 59 cytosolic 59 bryostatin 59 transmembrane 59 6S RNA 59 colocalization 59 vimentin 59 nucleolin 59 tumor specific antigen 59 microRNA molecule 59 Cy3 59 vertebrate genomes 59 isogenic 59 avidin 59 synuclein 59 CD# expression [001] 59 Schematic representation 59 RFLP 59 PrP 59 Macaca mulatta 59 mammalian proteins 59 protein translocation 59 RefSeq 59 gambiae 59 beta amyloid peptide 59 electron microscopic 59 nucleosome positioning 59 kilobase 59 shRNAs 58 polyamine 58 substituents 58 S. pombe 58 CDX2 58 Clusterin 58 noncoding 58 cell nuclei 58 MALAT1 58 DNA deoxyribonucleic acid 58 metagenomes 58 microbial genome 58 equimolar 58 skin fibroblasts 58 amyloid peptide 58 CRISPR Cas 58 hematoxylin 58 lung fibroblasts 58 HLA DQ 58 serine threonine kinase 58 ChR2 58 piRNAs 58 rDNA 58 constitutively expressed 58 E3 ligase 58 chondrocytes 58 qRT PCR 58 cyclin E 58 transduced 58 defensin 58 spectrophotometric 58 astrocyte cells 58 immunoprecipitation 58 cytidine 58 Phenotypic 58 mitochondrial genome sequence 58 FGF signaling 58 IFN g 58 streptavidin 58 DNA glycosylase 58 hydrogenase 58 TGF ß1 58 macromolecule 58 neuroblasts 58 mutant strains 58 intronic 58 umbilical vein 58 DNA demethylation 58 MWNT 58 phylogenetically 58 body louse genome 58 fluorescent protein GFP 58 archaeal 58 cerevisiae 58 gene deletions 58 OGG1 58 peptide antigens 58 N glycan 58 cationic lipid 58 genomic DNA 58 RNase L 58 blastomeres 58 hemagglutinin gene 58 anterior pituitary 58 array comparative genomic 58 NS5B 58 KIAA# 58 piggyBac 58 silicon nanowire 58 Amino acid 58 trans splicing 58 Gag protein 58 Jhdm2a 58 Green Fluorescent Protein 58 undifferentiated hESCs 58 presynaptic 58 PCR assay 58 nucleic acid sequence 58 Deinococcus 58 intracellularly 58 adenylate cyclase 58 importin 58 iNOS 58 albicans 58 experimentally validated 58 mesenchyme 58 BMP4 58 GlcNAc 58 Histological examination 58 extracellular proteins 58 pDNA 58 adducts 58 immunoreactivity 58 β actin 58 ribonucleoprotein 58 HLA G 58 breast epithelial cells 58 reaction RT PCR 58 microsomes 58 3'UTR 58 xenograft tumors 58 COOH terminal 58 FFPE tissue samples 58 T rubrum 58 stilbene 58 Mesenchymal Stem Cells 58 CD# ligand 58 cardiac fibroblasts 58 hnRNP 58 viral antigen 58 cytochrome 58 phylogenetic tree 58 endosomal 58 Bt genes 58 miRs 58 arginine residues 58 N acetyl 58 ultrastructural 58 baculovirus 58 FGFR3 58 telomerase gene 58 suppressor gene 58 fluorescent staining 58 Frizzled 58 subcellular 58 telomerase RNA 58 Bifidobacterium longum 58 Salmonella enterica 58 matrix metalloproteinase 58 Runx2 58 MDSCs 58 exfoliated graphene 58 odorant receptor 58 maize genome 58 Bt toxin 58 Dictyostelium 58 Immunohistochemical staining 58 QTLs 58 phagocytic cells 58 Photosystem 58 SETDB1 58 Annexin V 58 differentially expressed genes 58 hypervariable 58 poly L lysine 58 mouse testes 58 transcriptional profiles 58 bone marrow derived mesenchymal 58 oligo 58 mesenchymal cells 58 viral nucleic acids 58 electron micrographs 58 Phylogenetic 58 proteoglycan 58 microarray gene expression 58 stably expressing 58 GluR1 58 glycolipid 58 ligand binding 58 epitope 58 translationally 58 hybridizations 58 DNase 58 eukaryotic genomes 58 uracil 58 methyltransferase 58 glycosylated 58 cytosine methylation 58 rotifer 58 caveolin 1 58 metabolomic profiles 58 transposable elements 58 acinar 58 transgenesis 58 FMDV 58 neutralizing antibody 58 oligomeric 58 CPEB 58 transfection efficiency 58 ORFs 58 miR# 58 Drosophila embryos 58 erythrocytes 58 T#M 58 phosphoprotein 58 immunohistochemical staining 58 DGGE 58 ultrastructure 58 GenBank accession 58 immunoglobulin genes 58 cDNA sequencing 58 miRNA sequences 58 Neurotrophic Factor 58 P. furiosus 58 homology modeling 58 spore formation 58 hematopoietic cells 58 transgenes 58 insertional mutagenesis 58 peptide fragment 58 leukapheresis 58 phosphorylated proteins 58 thioredoxin 58 glutamic acid decarboxylase 58 C. neoformans 58 IL #E 58 interferon γ 58 embryonic tissue 58 follicular fluid 58 TNF receptors 58 P selectin 58 microglial activation 58 Figure 1C 58 trypanosome 58 homologs 58 pancreatic tissue 58 CYP#B# 58 splenocytes 58 amyloid fibrils 58 catalytically active 58 telomere DNA 58 PCR amplification 58 adduct 58 MMP# 58 5 hydroxymethylcytosine 58 midgut 58 Cytoplasmic 58 antiproliferative activity 58 differentially expressed proteins 58 metabolome 58 HER2 neu 58 chromatin immunoprecipitation 58 agarose gel 58 fluorescent molecules 58 microRNAs miRNAs 58 genomic sequences 58 murine models 58 germline 58 endocytic pathway 57 Illumina Solexa 57 Fig. 1C 57 biosynthetic pathway 57 c fos 57 fig. S4 57 cytokeratin 57 glycoprotein 57 embryonal carcinoma 57 bacterium Escherichia coli 57 ribosomal protein 57 c Fos 57 homeobox gene 57 HOTAIR 57 mRNA encoding 57 guanosine 57 magnesium ion 57 Dpp 57 fusion protein 57 gDNA 57 choroid plexus 57 GPI anchored 57 pDC 57 PC3 cells 57 Single Nucleotide Polymorphisms SNPs 57 mutant alleles 57 colon carcinoma 57 gene rearrangements 57 aneuploid 57 Secretase 57 Fig. 2B 57 enzymatic pathway 57 tissue microarray 57 ciliates 57 hydroxylase 57 prion protein PrP 57 proteolytic 57 peptide receptor 57 collagen gel 57 glomerular 57 synthetases 57 somatic mutation 57 GLUT4 57 haplotyping 57 homogenates 57 cytoplasmic 57 vitellogenin 57 enterocytes 57 chick embryo 57 cellularity 57 proline rich 57 immunohistochemistry IHC 57 adenovirus vectors 57 Xenopus oocytes 57 LRAT 57 Skeletal muscle 57 NADPH 57 peptide fragments 57 coiled coil 57 E. faecalis 57 gene inactivation 57 Phenylalanine 57 Neuropeptide Y 57 secretory pathway 57 PKC delta 57 serpin 57 murine 57 histone modification 57 amine oxidase 57 Homology 57 ErbB1 57 mesoderm 57 chemotactic 57 beta galactosidase 57 amino acid alanine 57 circulating endothelial 57 metazoan 57 dinucleotide 57 cells overexpressing 57 organism genome 57 VNTR 57 gene encodes 57 mammary stem cells 57 COL#A# 57 proteolysis 57 oligomer 57 inorganic phosphate 57 beta subunit 57 agarose 57 demethylase 57 GAPDH 57 microinjection 57 Typhi 57 ribosomal RNA genes 57 morphogen 57 homologous genes 57 holotype 57 soybean Glycine max 57 desaturase 57 HIF 1α 57 microarray analysis 57 transcriptional regulation 57 transgenic plants 57 glycolytic 57 ubiquitylation 57 Bacillus subtilis 57 E#F# 57 horseradish peroxidase 57 monophyletic 57 cyclin B1 57 NOD SCID mice 57 hematopoietic progenitor cells 57 Myeloperoxidase 57 glabrata 57 chromatin modification 57 breast carcinomas 57 intermediate filaments 57 GABAergic interneurons 57 trimeric 57 untranslated regions 57 myogenic 57 PCR RFLP 57 Alu elements 57 Histone 57 NKX#.# 57 osteoprotegerin 57 transcriptional regulator 57 acid phosphatase 57 explants 57 spermatogonia 57 B. subtilis 57 PCR primer 57 carboxylic acid 57 Fatty acid 57 Fig. 1E 57 polycystin 57 neurofilament 57 P gp 57 thymocytes 57 amyloid peptides 57 mesothelin 57 transferrin 57 phenotyping 57 enzymatically active 57 versicolor 57 TGF beta1 57 epidermidis 57 situ hybridisation 57 HCMV 57 keratinocytes 57 nanowire arrays 57 recombinase 57 idiotype 57 cytokine receptor 57 indirect immunofluorescence 57 EGFRvIII 57 coding sequences 57 maternally inherited 57 introgression 57 protein GFP 57 PGC 1α 57 vitro cytotoxicity 57 glutamate transporter 57 EF Tu 57 transcriptome profiling 57 A. niger 57 spider silk proteins 57 HLA DQ2 57 extracellular matrix ECM 57 Eukaryotic 57 Foxp3 57 Fig. 4a 57 LRP6 57 orthologous genes 57 ribosomal RNA rRNA 57 osteoblast 57 galactosidase 57 ventricular myocardium 57 LT IIb 57 MDR1 57 PIP3 57 bacterial genome 57 inhibitory receptor 57 receptor molecule 57 chimeric protein 57 focal adhesion kinase FAK 57 fig. S# 57 Dendritic cell 57 spermidine 57 microsomal 57 Fig. 3A 57 biosynthetic pathways 57 ALDH br cells 57 bacteria Bacillus 57 amino terminus 57 isotype 57 p#Kip# 57 alpha MSH 57 donor acceptor 57 protease activated 57 clathrin 57 vesicular stomatitis virus 57 micrograph 57 protein microarray 57 massively parallel sequencing 57 recombinant protein expression 57 Lymphocyte 57 fruitfly Drosophila 57 epidermal cells 57 polyglutamine 57 near infrared fluorescence 57 Figure 2C 57 metabolite profiling 57 glioma cells 57 gene expression profiles 57 GFP fusion 57 busulfan 57 OCT4 57 phenylene 57 HLA molecules 57 metalloprotease 57 shRNA 57 Staudinger ligation 57 thymocyte 57 ChIP chip 57 BALB c mice 57 Immunohistochemistry 57 Bacteroides 57 Genotypic 57 serotonin transporters 57 microarray experiments 57 cysteine protease 57 prion infectivity 57 mRNA sequences 57 nanocarrier 57 artificial chromosomes 57 mucins 57 Supplemental Figure 57 intercellular signaling 57 Histone H3