Related by context. All words. (Click for frequent words.) 76 #S rRNA 73 quantitative trait loci 72 phylogenetic analyzes 72 #S rRNA gene 72 cDNA microarray 72 #S rDNA 71 cDNA libraries 70 chloroplast genome 70 orthologs 70 phylogenetic analysis 70 mitochondrial DNA mtDNA 70 BAC clones 70 transcriptome sequencing 69 cDNAs 69 haplotypes 69 PCR RFLP 69 cDNA library 69 orthologous 69 introgression 68 A. thaliana 68 transcriptomes 68 mitochondrial genomes 68 VNTR 68 cytochrome b 68 Arabidopsis genome 68 microsatellite loci 67 phylogenies 67 genomewide 67 phylogenetically 67 indels 67 transcriptomic 67 Phylogenetic analysis 67 intronic 67 haplotype map 66 distinct lineages 66 contigs 66 Haplotype 66 mitochondrial gene 66 miRNA expression 66 QTLs 66 differentially expressed genes 66 Transcriptome 66 mtDNA sequence 66 autosomal 66 allele frequencies 66 indel 66 haplogroups 66 maize genome 66 ortholog 66 sequenced genomes 66 inbred strains 66 nucleotide sequences 66 denaturing gradient gel electrophoresis 66 transcriptional profiling 66 fungal genomes 66 methylation patterns 65 chromosome #q#.# [002] 65 bacterial genomes 65 genetic loci 65 Genotypic 65 linkage disequilibrium 65 genes differentially expressed 65 rRNA 65 Phylogenetic 65 genetic lineages 65 monophyletic 65 immunoblotting 65 phenotypic variation 65 mRNA transcripts 65 genomic sequence 65 missense mutations 65 proteomes 65 polyploid 65 differential gene expression 65 chromatin immunoprecipitation 65 metazoan 65 Alu elements 65 immunofluorescence microscopy 65 Saccharomyces 65 primate genomes 64 gambiae 64 proteomic analysis 64 PFGE 64 Single Nucleotide Polymorphisms SNPs 64 yeast genome 64 PCR amplified 64 ChIP chip 64 microarray experiments 64 gene expression profiles 64 evolutionary relatedness 64 linkage disequilibrium LD 64 Phenotypic 64 S. cerevisiae 64 genome annotation 64 genotypic 64 flow cytometric 64 At#g# 64 proteomic analyzes 64 homozygosity 64 paralogs 64 intergenic 64 SNP rs# [001] 64 transcriptome profiling 64 Tribolium 64 synteny 64 intergenic regions 64 comparative genomic 64 phenotypic traits 64 kilobase 64 P. patens 63 differentially expressed proteins 63 ncRNA 63 DGGE 63 mitochondrial genome 63 ribosomal RNA rRNA 63 kDa protein 63 Bos taurus 63 KIAA# 63 heterozygotes 63 synthases 63 RFLP 63 outbred 63 chromatin immunoprecipitation ChIP 63 NOD mouse 63 quantitative RT PCR 63 archaeal 63 SSR markers 63 sequence homology 63 clades 63 paternally inherited 63 C#BL 6 mice 63 Dictyostelium 63 transcriptome 63 gene locus 63 substrate specificity 63 subcellular localization 63 supertree 63 pseudogenes 63 microbiomes 63 S. pombe 63 Drosophila genome 63 cynomolgus macaques 63 oligonucleotide microarrays 63 maternally inherited 63 Prevotella 63 haplotype 63 genomic loci 63 positional cloning 63 transgenic rats 63 operons 63 heritable traits 63 methylated DNA 63 nucleotide substitution 63 plastids 63 HLA DQ2 63 fruitfly Drosophila 63 somatic mutations 62 clonally 62 splice junctions 62 Solexa sequencing 62 genetic markers 62 diploid genome 62 multigene 62 amino acid sequences 62 Western blotting 62 mammalian genomes 62 centromeric 62 previously undescribed 62 Human Leukocyte Antigen 62 PBMCs 62 ribosomal DNA 62 genome rearrangements 62 morphologically 62 ChIP seq 62 homologous genes 62 CRISPR Cas 62 cDNA 62 lymphoblastoid cell lines 62 coding exons 62 SDS PAGE 62 cytosine methylation 62 RT qPCR 62 lysates 62 cerevisiae 62 array CGH 62 molecular phylogeny 62 bisulfite sequencing 62 hierarchical clustering 62 Genotypes 62 outer membrane proteins 62 transcriptome analysis 62 loci 62 QTL mapping 62 susceptibility loci 62 homozygote 62 phenotyping 62 biochemical assays 62 epistasis 62 PRNP 62 genotypes 62 comparative genomic analysis 62 Xenopus laevis 62 phylogeographic 62 cell lysate 62 mitochondrial genome sequence 62 allelic 62 hepatoma 62 eukaryotic organisms 62 mutant allele 62 Caenorhabditis 62 parasitoid wasp 62 chromosome #q# [001] 62 amplicon 62 chromosomal DNA 62 malaria parasite genome 62 Polymorphism 62 genomic sequences 62 hypermethylated 62 non coding RNA 62 M. anisopliae 62 immunohistochemical 61 5 hmC 61 Leptospira 61 cM 61 serum antibodies 61 genotyping arrays 61 ORFs 61 mtDNA sequences 61 noncoding 61 ciliated 61 Xenopus 61 AFLP 61 PGCs 61 Streptomyces 61 splice variants 61 RefSeq 61 mutational analysis 61 #S rRNA genes 61 amplicons 61 cDNA sequences 61 budding yeast 61 phylogenetics 61 molecular phylogenetic 61 TILLING 61 fission yeast 61 Phylogenetic analyzes 61 D. melanogaster 61 mtDNA 61 lysine residues 61 cis regulatory 61 oligonucleotide microarray 61 phylogenetic trees 61 ant genomes 61 multiple logistic regression 61 metazoans 61 shotgun sequencing 61 RNA seq 61 gDNA 61 genomically 61 HLA DQ 61 plant Arabidopsis 61 ESTs 61 nucleic acid sequence 61 phenotypically 61 Macaca mulatta 61 transgenic mouse models 61 dinucleotide 61 prokaryotic 61 Haplogroup 61 orthologous genes 61 MALDI TOF MS 61 fluorescently tagged 61 C#BL/#J 61 operon 61 Y chromosomal 61 qRT PCR 61 variant rs# 61 RRM1 61 X chromosome inactivation 61 plastid 61 diploid 61 H#K#me# 61 subgenus 61 agarose gel electrophoresis 61 Trypanosoma brucei 61 histone modification 61 lactase persistence 61 allelic variation 61 virulence genes 61 VKORC1 61 site directed mutagenesis 61 ABCB1 gene 61 immunostaining 61 chromosome #q#.# [001] 61 Y Chromosome 61 chromatogram 61 C#BL 6 60 tetraploid 60 distinct subtypes 60 MTT assay 60 metabolomic profiles 60 Mutagenesis 60 Amino acid 60 gene sequences 60 Neandertal DNA 60 antisera 60 cellulases 60 modifier genes 60 microRNA expression 60 ploidy 60 alternatively spliced 60 PCR amplification 60 genomic proteomic 60 Saccharomyces cerevisiae 60 Aspergillus nidulans 60 Chlamydomonas reinhardtii 60 #p#.# [001] 60 histone H3 60 interactome 60 RNA sequences 60 immunocytochemistry 60 allelic variants 60 logistic regressions 60 #p# [003] 60 homologs 60 fig. S1 60 morphometric 60 PCR primers 60 CRISPR 60 Single Nucleotide Polymorphism 60 susceptibility locus 60 morphological traits 60 RNA binding 60 luciferase reporter 60 genotyped 60 immunohistochemistry IHC 60 globin genes 60 glabrata 60 trait locus 60 subfamilies 60 T. brucei 60 methyltransferase 60 pyrosequencing 60 rRNA gene 60 morphological characteristics 60 PCR assay 60 rDNA 60 single nucleotide polymorphism 60 S. enterica 60 #S ribosomal RNA 60 DNA methylation patterns 60 olfactory receptor 60 subcellular compartments 60 microarray analysis 60 Homology 60 phylogeny 60 clonal 60 ribosomal protein 60 polymerase chain reactions 60 R#W [002] 60 cynomolgus monkeys 60 cell lysates 60 SNP arrays 60 coding sequences 60 microbial genomes 60 MC1R gene 60 PcG proteins 60 Morphological 60 mammalian fatty acid 60 DNA demethylation 60 nucleotide sequence 60 prion gene 60 nucleotide substitutions 60 KLF4 60 DRD2 gene 60 trinucleotide 60 dbSNP 60 Alleles 60 cybrid 60 Eukaryotic 60 Immunohistochemical analysis 60 sequenced genome 60 Arabidopsis thaliana 60 phenotypic characteristics 60 phylogenetic relationships 60 chromosome #q# [002] 60 LRRK2 gene 60 plant Arabidopsis thaliana 60 frameshift mutation 60 C#Y 60 microdeletions 60 coexpression 60 miRNA sequences 60 S. Typhimurium 60 hypervariable 60 comparative genomic hybridization CGH 60 quantitative proteomics 60 Corynebacterium 60 RNA polymerases 60 TCF#L# gene 60 RT PCR assay 60 exonuclease 60 albicans 60 MRSA isolates 60 DNA deoxyribonucleic acid 60 X. laevis 60 hemagglutinin gene 60 genomic DNA 60 ovariectomized 60 Gene Ontology terms 60 situ hybridization 60 metapopulation 60 Infectivity 60 miRNA expression profiles 60 defensin 60 Whole Genome 60 AVPR1A 60 International HapMap Project 60 L. pneumophila 60 Anopheles gambiae 60 immunofluorescent 59 CpG island 59 viral genomes 59 Supplementary Table 59 microcephalin 59 2n = 59 chromosomal regions 59 endogenous retrovirus 59 quantitative reverse transcriptase 59 DHPLC 59 gene expression patterns 59 Antigenic 59 directed mutagenesis 59 pea aphid 59 Single Nucleotide Polymorphisms 59 P. infestans 59 Supplementary Fig 59 siRNA knockdown 59 Replikin 59 peroxidase 59 transposable elements 59 #q#.# [001] 59 vertebrate genomes 59 Volvox 59 oligonucleotide arrays 59 Ambystoma 59 Sanger sequencing 59 constitutively expressed 59 recombinants 59 Dehalococcoides 59 ribosomal proteins 59 histone H4 59 short hairpin RNAs 59 posttranslational modifications 59 subfamily 59 gene deletions 59 short hairpin RNA 59 mosaicism 59 metagenomes 59 phylogenetic tree 59 C#T [002] 59 enolase 59 Rhesus Macaque 59 cDNA sequencing 59 UTRs 59 worm C. elegans 59 microarray datasets 59 ZNF# 59 Sanger Sequencing 59 Trichoderma 59 eukaryotic genomes 59 Leydig cells 59 Drosophila melanogaster 59 P. falciparum 59 transgenic mouse model 59 Bacteroides 59 Illumina genotyping 59 mRNA molecules 59 gene expression microarrays 59 Mycoplasma genitalium 59 LPA gene 59 amine oxidase 59 kilobases 59 Bacillus subtilis 59 Illumina Solexa 59 Serological 59 aCGH 59 Arabidopsis genes 59 germline mutations 59 Chlamydomonas 59 vitro assay 59 alleles 59 experimentally validated 59 C. neoformans 59 Polymorphisms 59 #q# [001] 59 immunoprecipitation 59 mammalian genome 59 ChIP Seq 59 capsular polysaccharide 59 fruitflies 59 miRNA assays 59 multiple linear regression 59 single celled yeast 59 Cytochrome 59 haplotyping 59 retroviral vector 59 β galactosidase 59 transgenesis 59 GenBank accession 59 transfection efficiency 59 hexose 59 nucleic acid molecules 59 mitochondrial DNA sequences 59 ssDNA 59 microbial genome 59 homologues 59 nematode worm 59 serologically 59 telomere lengths 59 Caenorhabditis elegans 59 Multivariate analysis 59 bovine genome 59 evolutionary lineage 59 trypanosome 59 Genotyping 59 transcriptional repressor 59 disulfide bond 59 syngeneic 59 promoter methylation 59 LRAT 59 piggyBac 59 gene loci 59 iTRAQ 59 lacZ 59 Amborella 59 gel electrophoresis 59 kinome 59 A. niger 59 cytotoxicity assays 59 serine threonine kinase 59 tumorigenicity 59 monozygotic 59 transcriptional profiles 59 hemoglobins 59 Fig. 1b 59 homodimers 59 amino acid residues 59 noncoding RNAs 59 massively parallel sequencing 59 ESR1 59 comparative genomic hybridization 59 microarray gene expression 59 hybridizations 59 amino acid substitutions 59 metabolomic 59 fly Drosophila 59 Nocardia 58 situ hybridisation 58 quantitative PCR 58 causative mutation 58 enzyme linked immunosorbent 58 deletion mutant 58 Sprague Dawley rats 58 provirus 58 chimp genomes 58 cytokine receptors 58 Y STR 58 immunized mice 58 condensin 58 extracellular domains 58 heterozygote 58 body louse genome 58 DLC1 58 micro RNA 58 comparative genomics 58 ribonuclease 58 array comparative genomic 58 logistic regression analysis 58 chromosome rearrangements 58 amplicon sequencing 58 Trichophyton rubrum 58 supernatants 58 striata 58 metaplasia 58 histone modifications 58 Eukaryotes 58 homologies 58 IgG1 58 gag pol 58 Sequencing Systems 58 NF1 gene 58 sensu lato 58 mRNA expression 58 COL#A# 58 multiplex PCR 58 catechol O methyltransferase 58 siRNA duplexes 58 genes CYP#C# 58 chimpanzee genomes 58 Salmonella enterica 58 metabolome 58 segmental duplications 58 monozygotic twins 58 OCT4 58 Leishmania parasites 58 Clusterin 58 striated muscle 58 immunohistochemical analysis 58 Peromyscus 58 thaliana 58 chimpanzee Pan troglodytes 58 inferential statistics 58 isoenzymes 58 ultrastructure 58 Phenotypes 58 Nematode worms 58 karyotypes 58 replicase 58 HepG2 cells 58 genomewide association study 58 CpG methylation 58 rs# [004] 58 IgY 58 heterozygous 58 causative genes 58 drosophila 58 ABCB1 58 epigenetically 58 C. jejuni 58 chimpanzees Pan troglodytes 58 tiny roundworm 58 NS5B 58 M. genitalium 58 transgene expression 58 polynucleotides 58 phenotype 58 transcriptomics 58 chromosome #q 58 rs# [001] 58 isotypes 58 bacterial symbiont 58 chromosome #p# [001] 58 Fc gamma receptor 58 N acetyltransferase 58 quantitative mass spectrometry 58 distantly related species 58 phospholipase 58 ncRNAs 58 colorectal tumor 58 mutant strains 58 pseudogene 58 Bacillus thuringiensis bacterium 58 morphological 58 GSTP1 58 Mycobacterium smegmatis 58 Gene Ontology 58 hominoids 58 isotype 58 luciferase gene 58 Typhi 58 chick embryo 58 vitro cytotoxicity 58 HCV replicon 58 proband 58 Germline 58 Bt toxins 58 genetic variability 58 Proteobacteria 58 clade B 58 chick embryos 58 Fig. 1E 58 chromosome aberrations 58 Translocation 58 ALK mutations 58 Fig. 2a 58 K#R [002] 58 vesicular stomatitis virus 58 arabidopsis 58 N glycan 58 rs# rs# 58 Simian Immunodeficiency Virus 58 Infinium assay 58 Fc receptor 58 lymphoid cells 58 Paranthropus robustus 58 chromosome #p#.# 58 proteolytic cleavage 58 splenocytes 58 gametophyte 58 Histologic 58 BALB c mice 58 tissue microarrays 58 transcriptional regulation 58 EMBL scientists 58 HLA DRB1 58 photon microscopy 58 cDNA clones 58 fig. S4 58 RNA Seq 58 proline rich 58 MYBPC3 58 BeadChip 58 M. pneumoniae 58 Alkaline Phosphatase 58 Gallus gallus 58 cell nuclei 58 transgenic mice expressing 58 Comparative genomics 58 DNA sequences 58 CpG 58 biosynthetic pathways 58 mass spectrometric 58 mononuclear 58 polymorphisms 58 EGFP 58 deacetylation 58 siRNAs targeting 58 Hepatocyte 58 missense mutation 58 QPCR 58 flow cytometric analysis 58 HLA alleles 58 cationic lipid 58 CISH 58 metagenome 58 5 hydroxymethylcytosine 58 PTPN# 58 endogenous retroviruses 58 sexually dimorphic 58 flavopiridol 58 receptor gene 58 coding genes 58 teleost fish 58 tetramers 58 putative biomarkers 58 RNase L 58 organism genome 58 untranslated regions 58 V. cholerae 58 fruit fly Drosophila 58 fig. S2 58 lineages 58 bioassays 57 Raman spectra 57 ungulate species 57 metabolite concentrations 57 vivo assays 57 holotype 57 somatic embryogenesis 57 polyclonal 57 CC genotype 57 Bos indicus 57 ELISAs 57 5 methylcytosine 57 TOMM# 57 Mammalian 57 honeybee genome 57 accelerator mass spectrometry 57 lentiviral 57 phylogenetic 57 Histone 57 biophysical techniques 57 microRNA molecules 57 antigenic epitopes 57 brucei 57 AMACR 57 functional polymorphism 57 affinity purified 57 HBV genotype 57 Confocal microscopy 57 Apobec3 57 mutagenesis 57 yeast Saccharomyces cerevisiae 57 PALB2 57 E. faecalis 57 ultrastructural 57 SNP rs# [002] 57 mRNA sequences 57 Vitis vinifera 57 chimeric gene 57 Experimentally 57 eukaryote 57 morphogen 57 physicochemical properties 57 Affymetrix GeneChip 57 genotype 57 protein tyrosine phosphatase 57 extramedullary 57 inherited maternally 57 Phytophthora species 57 PrPSc 57 cultured neurons 57 transgenes 57 haploid 57 exome 57 viral genome 57 lysate 57 tammar wallaby 57 MSH2 57 synthetases 57 Deinococcus 57 proviral DNA 57 ERK signaling 57 prion protein gene 57 peptide receptor 57 heterologous expression 57 biotypes 57 amphioxus 57 embryonal carcinoma 57 multiprotein complex 57 demethylase 57 epigenetic modification 57 SLITRK1 57 centromeres 57 ANOVA 57 univariate 57 BRAF V#E 57 artificial chromosomes 57 FUS1 57 immunohistochemical staining 57 Micromonas 57 ADRB2 57 colugos 57 Salmonella serotypes 57 Phylogeny 57 Cre recombinase 57 ribonucleic acid RNA 57 gene duplications 57 faecal samples 57 nucleolar 57 Plasmodium vivax 57 Aspergillus oryzae 57 GPx 57 hippocampal neurons 57 coevolution 57 quantitative PCR qPCR 57 E. histolytica 57 phenotypes 57 epigenomes 57 pharmacophore 57 molecular markers 57 monogenic 57 eukaryotic cell 57 macromolecule 57 assay detects 57 Clonal 57 tissue microarray 57 T rubrum 57 metagenomic 57 tRNA synthetase 57 lentiviruses 57 CYP#D# gene 57 ciliates 57 ontogenetic 57 etiologic agent 57 Cytogenetic 57 hydroxylase 57 paramyxoviruses 57 RNA fragments 57 endospores 57 Viral RNA 57 miRNAs miR 57 semiquantitative 57 MLH1 57 Liver biopsies 57 genome 57 backcross 57 esterase 57 europaea 57 quasispecies 57 phenotypic 57 SURVEYOR Nuclease 57 APOL1 57 Streptococcus agalactiae 57 2D electrophoresis 57 genetic polymorphism 57 RNA amplification 57 matK 57 chromosomal anomalies 57 humanus 57 Xenopus tropicalis 57 secretory pathway 57 Isotopic 57 Secretase 57 evolutionary conserved 57 bioinformatic 57 landraces 57 human mammary epithelial 57 Fig. 2B 57 somatic mutation 57 uniparental 57 Cytochrome P# 57 femora 57 genetically divergent 57 homeobox genes 57 Bayesian inference 57 MDR1 57 missense 57 Microarray analysis 57 thermophilum 57 homology 57 hematopoietic progenitors 57 nitrogen isotope 57 histone acetylation 57 Enterobacter 57 subsp 57 silico prediction 57 serum biomarkers 57 mammary stem cells 57 retrotransposon 57 Molecular Evolution 57 conserved sequences 57 heterochromatic 57 extracellular domain 57 replicon 57 spontaneous mutations 57 simulans 57 previously uncharacterized 57 SLC#A# gene [001] 57 oligonucleotide probes 57 RNA extraction 57 inhibin B 57 chordate 57 CYP#B# 57 ribosomal RNA 57 spontaneous mutation 57 tetramer 57 EEG recordings 57 conditional logistic regression 57 SLC#A# [001] 57 doublecortin 57 clinicopathological 57 primordial germ cells 57 Trichinella 57 immunodominant 57 Enterococcus faecalis 57 Bifidobacterium longum 57 fluorescently labeled 57 Linear regression 57 chloroplast 57 DRD2 57 benzimidazole 57 genes encoding 57 microglial 57 herpesviruses 57 morphologically distinct 57 dopamine transporter gene 57 male Wistar rats 57 bacterial isolates 57 glycolipid 57 lincRNAs 57 isomerase 57 Arabidopsis plants 57 ADAMTS# 57 homodimer 57 A. gambiae 57 endosymbiont 57 recessive mutation 57 female gametophyte 57 unmethylated 57 ecotypes 57 Poisson regression 57 trophoblast cells 57 logistic regression models 57 acid phosphatase 57 PCR assays 57 sexually reproducing 57 ELISpot 57 homologous sequences 57 Immunohistochemical staining 57 chromatin remodeling complex 57 NSCLC tumors 56 chromatin modification 56 roundworm C. elegans 56 aminoacyl tRNA synthetases 56 BeadChips 56 genetic relatedness 56 endophytic 56 transient transfection 56 gene rearrangements 56 biotinylated 56 obligate intracellular 56 FKBP# 56 Aeromonas 56 lincRNA 56 gene expression microarray 56 Aspergillus niger 56 ABL1 56 PCR primer 56 endonuclease 56 exomes 56 Protease 56 peripheral blood mononuclear 56 histone acetyltransferase 56 soluble proteins 56 breast cancer subtypes 56 homology modeling 56 peptide sequences