Related by context. All words. (Click for frequent words.) 73 monophyletic 71 morphologically 71 orthologs 71 phylogeographic 69 paralogs 69 metazoan 68 eukaryote 68 operons 68 prokaryote 68 polyploid 68 phylogenetic relationships 68 bilaterians 68 phylogenies 67 microsatellite markers 67 phenotypic variation 67 subfamily 67 clades 67 chordate 67 rRNA 67 taxa 67 introgression 67 cnidarians 66 indels 66 homologs 66 archaeal 66 genetic loci 66 phylogenetic analyzes 66 cytochrome b 66 soluble proteins 66 sexually dimorphic 66 D. melanogaster 66 pseudogenes 66 haplogroups 66 phenotypic differences 66 A. thaliana 66 metazoans 65 ciliated 65 homologies 65 differential gene expression 65 intergenic regions 65 fungal genomes 65 bacterial genomes 65 mitochondrial genomes 65 prokaryotic 65 homozygosity 65 fig. S1 65 S. cerevisiae 65 sequence homology 65 morphological similarities 65 proteomes 65 coexpression 65 phylogenetic trees 65 bacterial symbiont 65 #S rRNA 65 missense mutations 65 microbiomes 65 evolutionary lineages 64 chordates 64 symbiont 64 sensu lato 64 Prevotella 64 cDNAs 64 morphological traits 64 subfamilies 64 genetic lineages 64 epigenetically 64 taxonomically 64 subgenus 64 #S rDNA 64 amphioxus 64 H. habilis 64 Buchnera 64 deuterostomes 64 coevolution 64 Chlamydomonas reinhardtii 64 evolutionarily conserved 64 mitochondrial gene 64 maternally inherited 64 SRY gene 64 Saccharomyces 64 distantly related species 64 hominoids 64 distinct lineages 64 synthases 63 jawed vertebrates 63 artifactual 63 Phylogenetic analyzes 63 epigenetic modification 63 Chlamydomonas 63 vesper bats 63 intronic 63 C. neoformans 63 prokaryotes 63 ciliates 63 RNA sequences 63 #S rRNA gene 63 tetramers 63 differentially expressed genes 63 morphologically distinct 63 conserved sequences 63 chimp genomes 63 autosomal 63 placental mammals 63 amino acid sequences 63 noncoding 63 Phylogenetic 63 intergenic 63 anomodonts 63 allelic variation 63 Alu elements 63 fission yeast 63 endosymbiosis 63 untranslated regions 63 primate lineage 63 mammalian genomes 63 phylogeny 63 indel 63 monozygotic twins 63 centromeres 63 endosymbiont 63 Pol IV 63 organism genome 63 homologous genes 63 Proteobacteria 63 evolvability 62 mtDNA sequences 62 genetic relatedness 62 polyploidy 62 euchromatin 62 chromosomal DNA 62 subcellular compartments 62 outbred 62 terrestrial vertebrates 62 segmental duplications 62 ontogeny 62 Macaca mulatta 62 disulfide bond 62 vertebrate embryos 62 virulence genes 62 alternatively spliced 62 supertree 62 piRNAs 62 colugos 62 Dictyostelium 62 spontaneous mutations 62 ornithischians 62 placentals 62 non coding RNA 62 ribosomal RNA rRNA 62 unicellular 62 M. pneumoniae 62 allele frequencies 62 methylation patterns 62 homologues 62 orthologous 62 ABCB1 gene 62 inbred strains 62 animal phyla 62 At#g# 62 clonally 62 Caenorhabditis 62 Phylogenetic analysis 62 nucleotide sequence 62 PrPC 62 evolutionary divergence 62 phylogenetic 62 convergent evolution 62 outer membrane proteins 62 neuroligins 62 ribosomal RNA 62 transmembrane protein 62 chromosomal rearrangements 61 DNA demethylation 61 phylogenetic analysis 61 S. pombe 61 sequenced genomes 61 Amborella 61 dimeric 61 Archaea 61 parasitoid wasp 61 condensin 61 ORFs 61 commensal bacteria 61 Dehalococcoides 61 angiosperms 61 ortholog 61 phylogenetic tree 61 T. vaginalis 61 molecular phylogenetic 61 dizygotic twins 61 Arabidopsis genome 61 vertebrate genomes 61 monozygotic 61 clade 61 gene locus 61 choanoflagellates 61 fruitflies 61 superfamily 61 morphological evolution 61 homologous 61 polyploids 61 ribosomal DNA 61 microsporidia 61 nucleotide sequences 61 paternally inherited 61 tyrannosaurids 61 C. jejuni 61 S. maltophilia 61 genome rearrangements 61 haplotypes 61 monocots 61 Hox gene 61 artiodactyls 61 mitochondrial DNA mtDNA 61 homodimer 61 eukaryotic 61 gambiae 61 trimers 61 endophytic 61 Xenopus 61 tRNA synthetase 61 heritable traits 61 ncRNAs 61 eukaryotic cells 61 homodimers 61 chromosome #q#.# [002] 61 gene duplications 61 biogeographic 61 synuclein 61 thermophilum 61 CYP#B# 61 cypin 61 spore formation 61 QTLs 61 ramidus 61 BAC clones 61 plastid 61 fig. S4 61 somites 61 VNTR 61 bryozoans 61 Comparative genomics 61 mammalian proteins 61 cellular prion protein 61 unmethylated 61 Homo neanderthalensis 61 Micromonas 61 female gametophyte 61 evolutionary lineage 61 gametophyte 61 X chromosome inactivation 61 L1 retrotransposons 61 prion gene 61 transcriptomes 61 hamartomas 61 Fig. 3a 61 reproductively isolated 60 Platynereis 60 amino acid residues 60 faunas 60 suborder 60 Prochlorococcus 60 CD1d 60 worm C. elegans 60 T. brucei 60 biosynthetic pathways 60 proline 60 epistasis 60 phenotypic characteristics 60 habilis 60 eusocial 60 A. gambiae 60 endogenous retroviruses 60 ultraconserved elements 60 flatfishes 60 symbioses 60 C. albicans 60 microbiota 60 pea aphid 60 thale cress Arabidopsis thaliana 60 KIAA# 60 glycolipid 60 lactase persistence 60 fibrillar 60 ncRNA 60 apoE4 60 elegans 60 histone H4 60 oligomeric 60 Caenorhabditis elegans 60 tetraploid 60 TCF#L# gene 60 striated muscle 60 phenotypic expression 60 S. sanguinis 60 phenotypically 60 mitochondrial genome 60 nucleotide substitution 60 D. simulans 60 chromosome #q#.# [001] 60 H#K#me# 60 posttranslational modifications 60 lymphoid cells 60 normal prion protein 60 ligand receptor 60 structural rearrangements 60 Woese 60 centromeric 60 P. gingivalis 60 #q#.# [002] 60 microcephalin 60 Volvox 60 transgene expression 60 evolutionary relatedness 60 splice variants 60 coding genes 60 multicellularity 60 orthologous genes 60 LIS1 60 mammalian brains 60 phenotypic traits 60 MECP2 gene 60 cis regulatory 60 #S ribosomal RNA 60 deletion mutant 60 electrophysiological properties 60 Neisseria 60 placental mammal 60 pleiotropy 60 angiosperm 60 morphogen 60 Supplementary Fig 60 teleost fish 60 mutant allele 60 symbionts 60 phyla 60 fascin 60 dizygotic 60 Xenopus laevis 60 NF1 gene 60 bdelloid rotifers 60 eukaryotic organisms 60 DNA transposons 60 Heterodontosaurus 60 Typhi 60 angiosperms flowering plants 60 mutant alleles 60 globin genes 60 annelid worms 60 cellulases 60 synteny 60 mtDNA sequence 60 FKBP# 60 familial clustering 60 miRNA expression 60 lobe finned fishes 60 matK 59 Bifidobacteria 59 Agrobacterium tumefaciens 59 ERK signaling 59 Phytophthora species 59 chloroplast genome 59 abnormal prion protein 59 gymnosperms 59 prion strains 59 telomere maintenance 59 #p#.# [001] 59 evolutionarily 59 recombination hotspots 59 FGFs 59 heterochromatic 59 multiprotein complex 59 karyotype 59 intraspecific 59 allelic 59 MHC genes 59 substrate specificity 59 viral genomes 59 transcriptional activation 59 mosaicism 59 tRNA synthetases 59 Homo species 59 germline cells 59 albicans 59 dermatophytes 59 genetic polymorphism 59 R#W [002] 59 Denisovan 59 NR#A# 59 lysine residues 59 hybridizations 59 rDNA 59 post translational modifications 59 DLC1 59 extracellular domains 59 outcrossing 59 glabrata 59 MLL gene 59 single celled yeast 59 hippocampal neurons 59 MALAT1 59 Eukaryotes 59 bacterium E. coli 59 tetramer 59 Bacteroides 59 hominoid 59 isotope ratios 59 translationally 59 T rubrum 59 HLA genes 59 physicochemical properties 59 previously undescribed 59 morphologies 59 Alleles 59 E. faecalis 59 hominin species 59 RNA polymerases 59 Saccharomyces cerevisiae 59 nucleotide substitutions 59 tropomyosin 59 morphologic 59 vasopressin receptors 59 gene rearrangements 59 suppressor gene 59 sexually reproducing 59 apoE 59 SVZ 59 A. niger 59 Paranthropus robustus 59 enzymatic activity 59 amine oxidase 59 L. pneumophila 59 teosinte 59 filoviruses 59 frameshift mutation 59 Mycobacterium smegmatis 59 5 hydroxymethylcytosine 59 operon 59 sporadic ALS 59 Ichthyostega 59 eukaryotic genomes 59 COL#A# 59 kDa protein 59 deacetylation 59 radial glia 59 Cucumis 59 plastids 59 lymphoblastoid cell lines 59 Asteraceae 59 monotremes 59 segmental duplication 59 yeast Saccharomyces cerevisiae 59 Aeromonas 59 sauropodomorphs 59 Amino acid 59 functional polymorphism 59 enterotypes 59 genotypic 59 TRIM5 59 transcriptional repressor 59 Raman spectra 59 etiologic 59 HtrA2 59 RNA binding 59 Fig. 1C 59 phytochrome 59 Y chromosomal 59 defensin 59 ploidy 59 transgenic mice expressing 59 transcriptomic 59 metaplasia 59 ontogenetic 59 site directed mutagenesis 59 felis 59 hepatoma 59 breast cancer subtypes 59 introns 59 tetrapods evolved 59 chromosomal rearrangement 59 B. subtilis 59 secretory pathway 59 A. ramidus 59 prion protein 59 histone modifications 59 T. gondii 59 M. anisopliae 59 TAp# 59 #S rRNA genes 59 nucleosome positioning 59 cohesin 59 axon guidance 59 P. patens 59 Sahelanthropus 59 ABCB1 59 USP# 59 stilbene 59 Rab5 58 lineages 58 subcellular localization 58 nucleobases 58 cDNA libraries 58 Fig. 1b 58 CYP#C# gene 58 DEAR1 58 ribozyme 58 cell nuclei 58 fruitfly Drosophila 58 IRAK1 58 holotype 58 heterozygous 58 homology 58 CagA 58 STAT4 58 MC1R 58 molecular phylogeny 58 exon intron 58 neutralizing antibody responses 58 Vps# 58 Hsp# [001] 58 unicellular organisms 58 centromere 58 transmembrane 58 contigs 58 serine protease 58 A. africanus 58 multigenic 58 erythrocytes 58 PTPN# 58 noncoding RNAs 58 gut microbiota 58 genetically divergent 58 TMEM#B 58 glycosylated 58 mutant strains 58 catalytically active 58 filamentous fungus 58 mRNA transcripts 58 Transcriptome 58 cDNA library 58 biogenesis 58 germline mutations 58 constitutively expressed 58 hypermethylated 58 neuroanatomical 58 cultured neurons 58 ostracods 58 coding exons 58 microbialites 58 A. sediba 58 Cyclin E 58 miR# 58 selfing 58 fungal strains 58 isoforms 58 PRNP 58 F actin 58 C4 grasses 58 postsynaptic 58 ALK mutations 58 tiny single celled 58 Fig. 2a 58 Rap1 58 mutualistic 58 neural crest cells 58 mammalian circadian clock 58 hindbrain 58 p# mutations 58 tumorigenicity 58 globular proteins 58 Confocal microscopy 58 CHD7 58 fibril 58 serum antibodies 58 HLA B# 58 eusociality 58 unisexual 58 subnetworks 58 CRISPR Cas 58 protist 58 proteolysis 58 retrotransposon 58 echinoderms 58 fig. S# 58 UTRs 58 uncharacterized 58 RNA transcripts 58 tyrosine phosphorylation 58 chromosomal anomalies 58 constitutively active 58 microdeletions 58 Borrelia 58 diploid 58 guanine G 58 nematode worm 58 yeast genome 58 subsp 58 CPEB 58 microdeletion 58 transcriptionally active 58 FUS1 58 MDCK cells 58 conspecifics 58 stoichiometry 58 quantitative trait loci 58 mRNA molecules 58 mitochondrial genome sequence 58 immunodominant 58 titin 58 noncoding DNA 58 vivax 58 clinicopathological 58 spindle fibers 58 CRISPR 58 punctate 58 interconversion 58 hydrated electron 58 amino acid substitutions 58 chloroplast 58 coevolved 58 B. burgdorferi 58 de novo mutations 58 olfactory receptor 58 collagenous 58 GPIHBP1 58 TMPRSS2 ERG fusion 58 centrioles 58 penetrance 58 single celled algae 58 isotypes 58 chromatid 58 neurexins 58 bilaterally symmetrical 58 intercellular signaling 58 ultraconserved 58 morphological 58 synapsis 58 imprinted genes 58 major histocompatibility complex 58 Anomalocaris 58 protein conformation 58 transmembrane proteins 58 Arabidopsis thaliana 58 epithelia 58 KLF4 58 cytosine methylation 58 cadherins 58 laforin 58 CpG 58 hominid evolution 58 heritable variation 58 A. fumigatus 58 non mammalian vertebrates 58 chromosomal regions 58 S. enterica 58 PDZ domains 58 pleiotropic effects 58 H. sapiens 58 biochemical assays 58 PKD1 58 clinicopathologic 58 pigment granules 58 paramyxoviruses 57 phenotype 57 quinone 57 herbivorous dinosaurs 57 sexual dimorphism 57 morphological characteristics 57 polygenic 57 planktonic 57 donor acceptor 57 primitive vertebrates 57 Fig. 3b 57 phenotypes 57 Trichophyton rubrum 57 PrP 57 proteolytic cleavage 57 photosynthetic organisms 57 Sinosauropteryx 57 heterozygosity 57 polypeptide chain 57 GSTM1 gene 57 haematopoietic 57 thymine 57 taxon 57 previously uncharacterized 57 Pan troglodytes 57 glycolytic 57 hemoglobins 57 PrPSc 57 karyotypes 57 VHL gene 57 WNK1 57 monoclonal antibodies aptamers 57 neutrino mass 57 chromosomal translocations 57 prognostically 57 Mus musculus 57 3'UTR 57 recessive mutation 57 DRD2 gene 57 motile cells 57 Skeletal muscle 57 #S subunit 57 intramolecular 57 endophenotypes 57 Acropora 57 NOD mouse 57 serine threonine kinase 57 somatic mutations 57 MC1R gene 57 X inactivation 57 HAR1 57 forkhead 57 primate genomes 57 centrosome 57 autosomes 57 ependymomas 57 gametocytes 57 chromosome #p#.# 57 disulfide bonds 57 oxygen isotope ratios 57 MTHFR gene 57 hMSCs 57 Haplogroup 57 RNA fragments 57 genomic sequence 57 ribonucleic acid RNA 57 isoleucine 57 Pollen grains 57 microRNA molecules 57 chimpanzees Pan troglodytes 57 endogenous ligands 57 C1q 57 miRs 57 chromatin structure 57 genomically 57 annelids 57 limbed vertebrates 57 proteomic analysis 57 perivascular 57 heterozygotes 57 roundworm C. elegans 57 immunocompetent 57 endospores 57 Hox genes 57 N. gonorrhoeae 57 epigenetic regulation 57 Thermus thermophilus 57 haplogroup 57 bacterium Escherichia coli 57 multi celled organisms 57 Rickettsia 57 blastomeres 57 adduct 57 nematode Caenorhabditis elegans 57 spontaneous mutation 57 Sindbis 57 chromosomal deletions 57 Anatomically 57 coccolithophores 57 splice junctions 57 AVPR1A 57 eukaryotic cell 57 valine 57 microglial 57 aneuploid 57 lateralized 57 sympatric speciation 57 clefting 57 lactobacilli 57 transferrin receptor 57 ovules 57 multicellular organisms 57 cDNA microarray 57 endonuclease 57 ERK2 57 Mycobacterium bovis 57 mtDNA 57 Nocardia 57 mutualistic relationship 57 microarray datasets 57 DNA methylation patterns 57 trypanosome 57 actinomycetes 57 intestinalis 57 mosasaurs 57 cellular organelles 57 transposable elements 57 prion proteins 57 histocompatibility 57 directed mutagenesis 57 alleles 57 proline rich 57 African cichlid fish 57 ribosomal proteins 57 melanogaster 57 gene polymorphisms 57 prodynorphin 57 telomeric 57 circadian clock genes 57 effector molecules 57 outgroup 57 sauropodomorph 57 NS5B 57 genetic heterogeneity 57 meiotic recombination 57 chromosome #q# [002] 57 tRNA genes 57 perirhinal cortex 57 cysteines 57 PGCs 57 N glycan 57 acyclic 57 PFGE 57 Deinococcus 57 GFP fluorescence 57 SIVcpz 57 vasopressin receptor 57 alpha synuclein gene 57 beta globin gene 57 cyanobacterial 57 cellularity 57 immunofluorescence microscopy 57 collagen fibrils 57 glycolipids 57 sphingolipid 57 pyrimidine 57 EBNA1 57 brucei 57 moss Physcomitrella patens 57 telomere DNA 57 CNTNAP2 57 dimorphism 57 amino terminal 57 vertebrate animals 57 KCNQ1 57 striata 57 Photorhabdus 57 Alternative splicing 57 Fig. 1D 57 trimer 57 chloroplast DNA 57 odorant receptor 57 copper zinc superoxide 57 epigenetic inheritance 57 HCV replication 57 microchimerism 57 gene deletions 57 melanosomes 57 Yersinia enterocolitica 57 Homology 57 MMP# 57 CNVs 57 lysates 57 M. leprae 57 metapopulation 57 Salmonella enterica 57 nitrogenase 57 nanobacteria 57 homologue 57 algal species 57 allele frequency 57 Arabidopsis plants 56 Single Nucleotide Polymorphisms SNPs 56 EoE 56 lincRNA 56 genes differentially expressed 56 braincase 56 Fig. 2b 56 Leydig cells 56 mutant proteins 56 chromosome rearrangements 56 fig. S2 56 PBMCs 56 normal prion proteins 56 ultrastructural 56 genomic imprinting 56 Corynebacterium 56 hypothalamic pituitary 56 rhizobia 56 epidermal cells 56 alpha synuclein protein 56 constitutively 56 crystallin 56 SLC#A# [002] 56 macromolecule 56 single celled microbes 56 peroxidase 56 H#N# isolates 56 lacZ 56 insulin signaling pathways 56 thermodynamic stability 56 ultrastructure 56 Mendelian 56 zebrafish genome 56 genetic locus 56 distinct subtypes 56 genetically encoded 56 lactis 56 Diptera 56 SOCS3 56 Aspergillus species 56 binding affinities 56 polypeptides 56 GBM tumors 56 lung adenocarcinomas 56 Nedd4 56 subcellular 56 dyads 56 Drosophila genome 56 DGGE 56 coelurosaurs 56 plectasin 56 genes predisposing 56 stegosaurs 56 carbon isotopes 56 pairwise 56 phylum 56 conifers ferns 56 fluorescently tagged 56 neural crest 56 budding yeast 56 Lamarckian 56 coding sequences 56 SLC#A# [001] 56 sister chromatids 56 BCL#A 56 transgenic mouse models 56 protists 56 aneuploid cells 56 mammalian fatty acid 56 LB1 56 rostral 56 Brusatte 56 aneuploidies 56 intracellularly 56 KCNH2 56 hydrogenase 56 mRNA decay 56 spinous 56 nucleolus 56 ribonucleotide 56 photosystem II 56 Nod1 56 cytopathic 56 Eg5 56 MAPK pathway 56 marine invertebrates 56 chromosome #q# [001] 56 methanogens 56 Histological examination 56 Histologically 56 Xenopus tropicalis 56 Homo genus 56 endogenous retrovirus 56 Aromatase 56 Brassica oleracea 56 Dpp 56 commensal 56 flatworm 56 qRT PCR 56 orangutan genome 56 cerevisiae 56 N glycans 56 cytoplasmic domain 56 Leydig cell 56 trinucleotide 56 Plasmodium species 56 mammalian brain 56 CD#c 56 MRSA isolates 56 dromaeosaurs 56 inactive X chromosome 56 mouse ESCs 56 glycosyltransferase 56 mitochondrial metabolism 56 paradoxus 56 LRRK2 gene 56 M. smithii 56 multigene 56 ZNF# 56 noncoding regions 56 SARS CoV 56 CETP VV 56 PON1 56 heterochromatin 56 bdelloid rotifer 56 mouse testes 56 cofactor 56 dinucleotide 56 species Australopithecus afarensis 56 vacuolar 56 sRNA 56 leptin receptor 56 IL#R 56 antigenic peptide 56 intracytoplasmic 56 apo AI