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(Click for frequent words.) 67 eukaryote 66 mitochondrial genome 65 mammalian genomes 65 Arabidopsis genome 65 woolly mammoth genome 64 primate genomes 64 yeast genome 64 prion gene 64 mitochondrial genomes 64 chimpanzee genome 63 organism genome 63 bacterial genome 63 kilobase 62 genomes 62 Alu elements 62 genome 62 chimp genome 61 nucleotide sequences 61 protein coding 61 mitochondrial gene 61 metabolome 61 microbial genomes 61 human genome 61 nucleotide sequence 61 maize genome 61 indels 60 HAR1 60 transcriptomes 60 #S rRNA 60 kilobases 60 sequenced genomes 60 chimpanzee genomes 60 noncoding DNA 60 somatic mutations 60 noncoding 60 coding sequences 60 Neandertal genome 60 genomic sequence 59 transcriptome sequencing 59 intergenic 59 NF1 gene 59 exome 59 X. laevis 59 DNA sequences 59 vertebrate species 59 bacterial genomes 59 placental mammals 59 cytochrome b 59 Mycoplasma genitalium 59 microsatellite markers 59 RNA transcripts 59 metazoan 59 mRNA transcripts 59 microcephalin 58 primate evolution 58 body louse genome 58 sequence homology 58 amino acid sequences 58 eukaryotic 58 non coding RNA 58 mammalian organisms 58 autosomal 58 evolutionary lineages 58 diploid genome 58 evolutionary lineage 58 maternally inherited 58 transcriptome 58 Single Nucleotide Polymorphisms SNPs 58 eukaryotic genomes 58 telomere DNA 58 genome sequences 58 nucleotide substitutions 58 fungal genomes 58 human genome sequence 58 olfactory receptors 57 contigs 57 genetic loci 57 Neanderthal DNA 57 honeybee genome 57 epigenome 57 M. genitalium 57 missense mutations 57 gene sequences 57 Venter genome 57 viral genomes 57 epigenetic modification 57 recombination hotspots 57 short hairpin RNAs 57 vertebrate genomes 57 Hox genes 57 nucleotide bases 57 coding genes 57 A. thaliana 57 PALB2 57 mitochondrial DNA mtDNA 57 Neandertal DNA 57 Neanderthal genome 57 linkage disequilibrium 57 exomes 57 blastomeres 57 X chromosome 57 heterochromatic 57 haplotype map 57 mtDNA 57 megabases 57 alternatively spliced 57 ncRNA 57 splice variants 57 prokaryote 57 proteomes 57 HLA genes 57 ORFs 57 micro RNA 57 mammalian species 56 zebrafish genome 56 orthologs 56 Decoding genome 56 spontaneous mutations 56 BAC clones 56 exons 56 heterochromatin 56 methylation patterns 56 chimp genomes 56 viral genome 56 insertions deletions 56 cDNAs 56 pseudogenes 56 paralogs 56 imprinted genes 56 transposon 56 phylogeny 56 microRNAs miRNAs 56 haplotypes 56 ortholog 56 Drosophila genome 56 miRNAs 56 amino acid sequence 56 segmental duplications 56 FOXP2 56 ncRNAs 56 odorant receptors 56 X. tropicalis 56 eukaryotic organisms 56 #p#.# [001] 56 HCMV 56 Neanderthal genome sequence 56 archaeal 56 #S rRNA gene 56 RNA splicing 56 eukaryotic cell 56 miRNA sequences 56 CCL#L# 56 sequenced genome 56 Hox gene 56 platypus genome 56 microbial genome 55 X inactivation 55 indel 55 phenotypic variation 55 C. neoformans 55 RNA molecule 55 CNVs 55 single celled yeast 55 genome decoded 55 noncoding RNAs 55 aneuploid 55 TRIM5 55 Segmental duplications 55 mRNA molecules 55 splice junctions 55 intergenic regions 55 genomic loci 55 RNA polymerases 55 malaria parasite genome 55 genome sequenced 55 transposable elements 55 Volvox 55 microRNA molecules 55 cDNA libraries 55 human microbiome 55 endogenous retrovirus 55 pseudogene 55 euchromatin 55 amplicon 55 macaque genome 55 opossum genome 55 clades 55 Arabidopsis genes 55 deuterostomes 55 ribosomal RNA 55 human proteome 55 amphioxus 55 mammalian 55 ribonucleic acids 55 DNA demethylation 55 endogenous retroviruses 55 mtDNA mutations 55 International HapMap Project 55 piRNAs 55 UTRs 55 multi celled organisms 55 orthologous 55 evolutionarily conserved 55 coding exons 55 polyploid 55 extracellular domains 55 eukaryotic cells 55 Plasmodium falciparum 55 microRNAs 55 orangutan genome 55 prokaryotes 55 Plasmodium 54 Neanderthal genes 54 bovine genome 54 orthologous genes 54 rhesus genome 54 cnidarians 54 proteins encoded 54 ribonucleic acid RNA 54 Sanger sequencing 54 connectome 54 mutant worms 54 myostatin gene 54 virulence genes 54 subfamilies 54 rDNA 54 splice variant 54 ultraconserved elements 54 rRNA 54 VHL gene 54 miRNA expression 54 genomic sequencing 54 totipotent 54 soluble proteins 54 interactome 54 phenotypic expression 54 multicellular organisms 54 genes 54 Genome sequencing 54 multicellular 54 genetic sequences 54 epigenomic 54 chordate 54 SCN5A 54 genetic recombination 54 sea urchin genome 54 mutant allele 54 olfactory receptor 54 mutated genes 54 FOXP2 gene 54 #q#.# [002] 54 Anopheles gambiae 54 Chlamydomonas 54 genomewide 54 Dicer enzyme 54 karyotype 54 ramidus 54 KIAA# 54 phylogenetically 54 primate species 54 segmental duplication 54 rotifer 54 metazoans 54 sequencing 54 intronic 54 PTPN# 54 telomeric 54 genome sequence 54 mRNA molecule 54 ribosomal RNA rRNA 54 TP# gene 53 DNA deoxyribonucleic acid 53 RNA molecules 53 louse genome 53 angiosperm 53 germline 53 hypermethylated 53 microRNA molecule 53 apoE 53 cis regulatory 53 #S rRNA genes 53 mtDNA sequences 53 progranulin gene 53 amplicons 53 genome annotation 53 ribosomal DNA 53 phylogenetic analyzes 53 gene expression patterns 53 gene expression 53 vertebrate animals 53 chordates 53 tetramers 53 phylogenies 53 HMGA2 gene 53 GNAQ 53 zebra finch genome 53 mutant alleles 53 5 hydroxymethylcytosine 53 cDNA library 53 epigenetic modifications 53 haploid 53 SHANK3 53 ciliated 53 striated muscle 53 Illumina HiSeq 53 LRAT 53 vertebrates 53 loci 53 Neandertal 53 phylogenetic analysis 53 proteomic analysis 53 telomerase RNA 53 allele frequencies 53 SNPs 53 somatic stem cells 53 FMR1 53 proteome 53 untranslated regions 53 ant genomes 53 PTEN gene 53 homologies 53 RNA sequences 53 epigenetically 53 quantitative trait loci 53 monophyletic 53 viral RNA 53 phylogenetic tree 53 prion protein gene 53 homodimer 53 noncoding RNA 53 allelic 53 heritable traits 53 Wolbachia 53 RNA Seq 53 Typhi 53 suppressor gene 53 phyla 53 FMR1 gene 53 Trichoplax 53 microRNA genes 53 ERK2 53 mitochondrial genome sequence 53 subfamily 53 chloroplast genome 53 SRY gene 53 exon 53 BRCA1 gene 53 CpG islands 53 vertebrate 53 peptide sequences 53 X chromosome genes 53 M. pneumoniae 53 centromeres 53 vertebrate evolution 53 protein coding RNAs 53 Micromonas 53 5 hmC 53 multicellular organism 53 ultraconserved 53 isotype 53 sequenced 53 #S subunit 53 Paranthropus robustus 53 subcellular 53 uncharacterized 53 haplogroups 53 BRAF protein 53 short hairpin RNA 53 giant panda genome 53 pathogenic mutations 53 A. gambiae 53 D. melanogaster 53 Svante Pääbo 53 exon intron 53 mammalian evolution 53 sporadic ALS 53 eotaxin 53 CFTR gene 53 hemagglutinin gene 53 #p# [001] 53 OCA2 gene 53 microdeletions 53 methylated DNA 53 epigenomes 53 worm C. elegans 53 mosaicism 53 PKD1 53 transposons 53 genetic lineages 53 prokaryotic 52 mutant genes 52 sensory receptors 52 SLITRK1 52 Pax6 52 chromosome #q#.# [001] 52 TEP1 52 amino acid residues 52 Leydig cells 52 non coding RNAs 52 Supplementary Fig 52 histone modification 52 humans Homo sapiens 52 MECP2 gene 52 CTCF 52 microarray experiments 52 HMGA2 52 Denisovan 52 backboned animals 52 inherited maternally 52 Trypanosoma brucei 52 chromosomal rearrangements 52 TERT 52 brucei 52 unmethylated 52 mammalian brain 52 cybrid 52 gametophyte 52 epigenetic regulation 52 genomic variation 52 transmembrane protein 52 mutant mouse 52 developmental plasticity 52 codons 52 allelic variation 52 #S rDNA 52 intron 52 lincRNA 52 ribosomal proteins 52 LRRK2 gene 52 M. capricolum 52 H. habilis 52 distantly related species 52 Htt 52 primordial germ cells 52 miRNA 52 exonuclease 52 genetic alteration 52 sRNA 52 5 methylcytosine 52 gene amplification 52 Klotho gene 52 planarian 52 TCF#L# gene 52 siRNA sequences 52 encodes protein 52 nematode worm 52 causative genes 52 NFKBIA 52 klotho 52 miRNA genes 52 primate lineage 52 gene encoding 52 genetic variation 52 alternative splicing 52 colugos 52 histone modifications 52 X chromosome inactivation 52 SLC#A# gene [001] 52 mammalian ancestor 52 cDNA microarray 52 RNA seq 52 laforin 52 outer membrane proteins 52 fig. S1 52 experimentally validated 52 subventricular zone 52 odorant receptor 52 homologous sequences 52 shotgun sequencing 52 tRNA synthetase 52 phylogenetic relationships 52 small RNAs encoded 52 budding yeast 52 trypanosome 52 causative mutations 52 chromosome #q# [002] 52 synthetic genome 52 microbiomes 52 QTLs 52 genus Homo 52 palladin 52 OCA2 52 genetic variants 52 animal phyla 52 genomic DNA 52 nematode worms 52 Gag protein 52 epigenetic markers 52 PrPSc 52 carnivore species 52 Fragile X mental retardation 52 membrane proteins 52 mutated K ras 52 H2AX 52 monotremes 52 introgression 52 RNA genome 52 MIF protein 52 Fanconi proteins 52 primary cilium 52 autism susceptibility genes 52 fruitfly Drosophila 52 BRIP1 52 megabase 52 lymphoblastoid cell lines 52 conserved sequences 52 Neurospora 52 lung adenocarcinomas 52 Xenopus laevis 52 HERV 52 PKM2 52 chromosome 52 IRAK1 52 alpha synuclein gene 52 enolase 52 meganucleases 52 chromosome rearrangements 52 genotyping arrays 52 haplogroup 52 genomic proteomic 52 homologues 52 Deinococcus 51 ChIP chip 51 PtERV1 51 superorganism 51 homology 51 calpastatin 51 dromaeosaurid 51 H#K#me# 51 lincRNAs 51 Australopithecines 51 H. sapiens 51 chromosome translocations 51 reproductively isolated 51 sexually reproducing 51 KCNQ1 51 MeCP2 gene 51 phenotypic traits 51 heterozygotes 51 fascin 51 genome rearrangements 51 inbred strains 51 Cyclin D1 51 gene duplications 51 nucleotide 51 miRNA molecules 51 ancient retrovirus 51 Xenopus tropicalis 51 single nucleotide polymorphism 51 amino acid substitution 51 unicellular organism 51 Ardipithecus ramidus 51 Drosha 51 Solexa sequencing 51 genes encoding 51 biogenesis 51 S. cerevisiae 51 evolvability 51 metalloproteins 51 prestin 51 autosomes 51 MC4R gene 51 P. falciparum 51 sexually dimorphic 51 shRNAs 51 centrosomes 51 gut microbes 51 HLA molecules 51 EBNA1 51 transmembrane proteins 51 MSH2 51 RKIP 51 SMN2 51 #S ribosomal RNA 51 connexin 51 centromeric 51 receptor gene 51 CDKN2A 51 positional cloning 51 rRNA genes 51 worm Caenorhabditis elegans 51 MC1R 51 multicellularity 51 HLA loci 51 malaria parasite Plasmodium falciparum 51 miRNA assays 51 genomic 51 Single Nucleotide Polymorphism SNP 51 LB1 51 germline cells 51 parthenogenetic 51 gene 51 reprogramming genes 51 telomeric DNA 51 MicroRNA 51 dbSNP 51 epithelial tissues 51 SOD1 gene 51 ChIP seq 51 operon 51 heritable 51 neo cortex 51 evolutionary relatedness 51 genes differentially expressed 51 CHD7 51 regulates gene expression 51 mutation 51 Mre# 51 amino acid substitutions 51 bacterium genome 51 immunoglobulin genes 51 HLA B# 51 p# mutations 51 T. brucei 51 RUNX3 51 green alga Chlamydomonas 51 MC1R gene 51 Foxp2 51 lineages 51 Osedax 51 clade B 51 ChIP Seq 51 Homo species 51 haplotype 51 genetic rearrangements 51 deoxyribonucleic acid 51 major histocompatibility complex 51 C#T [002] 51 HLA alleles 51 mtDNA sequence 51 SMAD4 51 INF2 51 defensins 51 DNA methylation patterns 51 Europasaurus 51 antisense RNA 51 chromosomal regions 51 oligonucleotide probes 51 Amborella 51 archeopteryx 51 ribozyme 51 ontogeny 51 Fig. 1D 51 GFP gene 51 Plasmodium vivax 51 bdelloid rotifer 51 chlorosomes 51 heterozygosity 51 miRNA expression profiles 51 artificial chromosomes 51 mutated protein 51 nematode C. elegans 51 Genomes Project 51 Paabo 51 mouse testes 51 Prox1 51 HSPCs 51 molecular phylogenetic 51 centrosome 51 mutational 51 CRISPR 51 microRNA expression 51 DNA rearrangements 51 jawed vertebrates 51 eukaryotes 51 valine 51 chromatin structure 51 filoviruses 51 chromosome #p# [001] 51 Illumina Solexa 51 Pääbo 51 messenger RNAs 51 eusocial 51 HOTAIR 51 genetic sequencing 51 diploid 51 plastid 51 GBM tumors 51 hominoid 51 chromosomal DNA 51 PGCs 51 pyrosequencing 51 bilaterians 51 FASPS 51 chromosomal deletions 51 microRNA miR 51 GenBank database 51 gigabases 51 RNA ribonucleic acid 51 microRNA 51 abnormal prions 51 p# protein 51 clonally 51 luciferase gene 51 habilis 51 Wolbachia infection 51 EAAT2 51 abnormal prion protein 51 lactase gene 51 protein fragment 51 nonhuman primate 51 endonuclease 51 site directed mutagenesis 51 micro RNAs 51 CNTNAP2 51 insulin signaling pathway 51 mitochondrial genes 51 transgenic mouse model 50 Prevotella 50 globin genes 50 monozygotic twins 50 HLA markers 50 V3 loop 50 evolutionary conserved 50 DLX5 50 microbiota 50 whole genome genotyping 50 genetic markers 50 LIS1 50 gene expression microarray 50 Platynereis 50 protein encoded 50 Math1 50 ligand binding 50 de novo mutations 50 gut microbiome 50 clade C 50 medulloblastomas 50 BMAL1 50 Shiekhattar 50 3'UTR 50 MiRNAs 50 mammalian fatty acid 50 chromosome #q 50 histone protein 50 mRNA decay 50 Yamanaka recipe 50 Woese 50 phylogenetic trees 50 operons 50 parkin gene 50 monogenic 50 protein synthesis machinery 50 ubiquitylation 50 aneuploidies 50 Tribolium 50 pea aphid 50 taxa 50 IDH1 gene 50 gymnosperms 50 EGFR gene 50 voxels 50 S. mansoni 50 microarray analysis 50 unmutated 50 nucleotide substitution 50 neuroligins 50 genomic sequences 50 Fig. 3b 50 australopithecine 50 microarray datasets 50 Paleobiology Database 50 dromaeosaurs 50 spontaneous mutation 50 calpain 50 neural fibers 50 DLC1 50 hypervariable 50 centromere 50 chloroplast 50 high throughput sequencing 50 genetic alterations 50 mutations 50 DICER1 gene 50 distinct subtypes 50 siRNA knockdown 50 distinct lineages 50 CYP#D# gene 50 poly dA 50 homologs 50 endosymbiont 50 histone demethylase 50 Nematode worms 50 epitopes 50 exome sequencing 50 differential gene expression 50 circadian genes 50 hindbrain 50 avian dinosaurs 50 Bos taurus 50 MeCP2 protein 50 multigenic 50 TMEM#B 50 dsRNA 50 cytosine methylation 50 human genome sequencing 50 MLH1 50 antibody antigen 50 genomic deletions 50 morphological similarities 50 HER2 neu 50 genotyped 50 PCR amplified 50 methylation markers 50 nucleated cells 50 electron micrographs 50 autoreactive 50 subcellular localization 50 HLA DQ2 50 catalytic subunit 50 Sahelanthropus 50 somatic cells 50 choanoflagellates 50 chimpanzees diverged 50 HER2 gene 50 Replikin 50 cell nuclei 50 introns 50 P. patens 50 enterotypes 50 sauropod dinosaur 50 #q# [001] 50 metagenomic 50 endosymbiosis 50 polyploidy 50 FUS1 50 anti microbial peptides 50 single celled microorganisms 50 Homo genus 50 nucleotides 50 genetic blueprints 50 tumor suppressor protein 50 ADAMTS# 50 substrate specificity 50 Wnt proteins 50 replicon 50 malarial parasites 50 granule cells 50 proviral DNA 50 inherited mutations 50 T. gondii 50 cellulases 50 celled organism 50 kinome 50 P. reichenowi 50 TRIM5a 50 nucleic acid molecules 50 intestinalis 50 subcellular compartments 50 genotypic 50 C. jejuni 50 MALAT1 50 microbiome 50 frameshift mutation 50 GenBank accession 50 SMN2 gene 50 gen sequencing 50 H. floresiensis 50 primitive organisms 50 lymphoid tissue 50 tumor suppressor gene 50 phenotypic characteristics 50 primordia 50 piggyBac 50 retrotransposons 50 GPC5 50 miR #b [002] 50 homochirality 50 cDNA 50 Drosophila 50 hominid ancestors 50 epigenomics 50 APOL1 50 cryo electron microscopy 50 protein isoforms 50 stem cell pluripotency 50 Homo neanderthalensis 50 enzymatic activity 50 dimorphic 50 dysbindin 50 transdifferentiation 50 epicardium 50 chromosome #q# [001] 50 T. vaginalis 50 Transcriptome 50 homeobox gene 50 Wwox 50 ABCB1 gene 50 Aspergillus nidulans 50 female gametophyte 50 Nimbadon 50 Gill Bejerano 50 Castorocauda 50 mRNAs 50 RCAN1 50 nucleolar dominance 50 sphingolipid 50 ESTs 50 NR#A# 50 inactive X chromosome 50 germline stem cells 50 regulate gene expression 50 matK 50 species Australopithecus afarensis 50 coexpression 50 encode proteins 50 morphologically distinct 50 Homo sapiens evolved 50 Ardipithecus 50 RNA sequencing 50 cM 50 colorectal tumor 49 VNTR 49 symbiont 49 single celled 49 antisense oligonucleotides 49 druggable targets 49 differentially expressed genes 49 genetic makeup 49 genomic rearrangements 49 phylogenetic 49 RefSeq 49 GATA4 49 eusociality 49 dinosaur genera 49 PDZ domains 49 paternally inherited 49 gene loci 49 enzymatically active 49 Akt1 49 HCV replication 49 PrP 49 XPB 49 Drosophila melanogaster 49 ostracods 49 seminal vesicles 49 NEIL1 49 allele frequency 49 genetically identical 49 transfer RNA tRNA 49 MYH9 49 aCGH 49 glycosylated 49 prodynorphin 49 SMN protein 49 BARD1 49 HLA DRB1 49 ornithischians 49 IGF2 49 ADAM# 49 Microraptor gui 49 gene locus 49 Acanthostega 49 DNMT1 49 RNA silencing 49 maternal lineages 49 homo erectus 49 Nicholas Katsanis Ph.D. 49 GPCRs 49 Igf2 49 PHLPP 49 chimps diverged 49 dengue viruses 49 chromatin immunoprecipitation ChIP 49 crystallin 49 Hsp# [001] 49 CGG repeats 49 hpSCs 49 CHI#L# 49 morphologic 49 supertree 49 fission yeast 49 Phylogenetic analysis 49 At#g# 49 proteolytic cleavage 49 messenger RNAs mRNAs 49 morphological characteristics 49 heterozygous 49 Anchiornis huxleyi 49 thale cress 49 comparative genomic analysis 49 gene rearrangements 49 Irs2 49 Neandertals 49 functional annotation 49 single molecule sequencing 49 P. vivax 49 Ichthyostega 49 transcriptomics 49 australopithecines 49 KRAS oncogene 49 variant allele 49 genetic relatedness 49 meganuclease 49 promoter methylation 49 breast cancer genes BRCA1 49 abnormal chromosomes 49 cypin 49 olfactory bulb